Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   MID13_RS12795 Genome accession   NZ_CP092384
Coordinates   2886820..2887425 (+) Length   201 a.a.
NCBI ID   WP_086711963.1    Uniprot ID   A0A7Y3YN51
Organism   Vibrio gigantis strain ACE001     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2881820..2892425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID13_RS12775 (MID13_12775) - 2882051..2882968 (-) 918 WP_239716618.1 ABC transporter ATP-binding protein -
  MID13_RS12780 (MID13_12780) - 2883292..2884923 (-) 1632 WP_190960481.1 SulP family inorganic anion transporter -
  MID13_RS12785 (MID13_12785) can 2885210..2885878 (+) 669 WP_086711961.1 carbonate dehydratase -
  MID13_RS12790 (MID13_12790) hpt 2885952..2886482 (-) 531 WP_239716620.1 hypoxanthine phosphoribosyltransferase -
  MID13_RS12795 (MID13_12795) opaR 2886820..2887425 (+) 606 WP_086711963.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  MID13_RS12800 (MID13_12800) lpdA 2887615..2889045 (-) 1431 WP_086711964.1 dihydrolipoyl dehydrogenase -
  MID13_RS12805 (MID13_12805) aceF 2889288..2891198 (-) 1911 WP_239716622.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23252.51 Da        Isoelectric Point: 6.4921

>NTDB_id=657089 MID13_RS12795 WP_086711963.1 2886820..2887425(+) (opaR) [Vibrio gigantis strain ACE001]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTNEELSKLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=657089 MID13_RS12795 WP_086711963.1 2886820..2887425(+) (opaR) [Vibrio gigantis strain ACE001]
ATGGACTCAATCTCTAAGAGACCTAGAACTAGGCTTTCACCTCTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
AGTGTTCTCTCGCCGTGGCATTGGCCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCAGTAGCAACCGTAT
TTAACTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTACTGAATCACGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
TAGCCATTGGTTAAATGTATGGTTCGAATGGAGCGCTTCGACTCGTGATGAAGTATGGCCGCTGTTCGTAACAACTAACC
GAACTAACCAAATGTTAGTACAAAACATGTTTAGTAAAGCGATTGAGCGCGGCGAAGTTTGCGACGATCACGACCCTAAA
CATCTAGCGAACCTATTCCACGGCATCTGCTACTCGCTGTTCATTCAAGCGAAACGTGTCGATACCAATGAAGAACTGTC
TAAACTTACTGACAGCTACTTAAACATGTTGTGTATCTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y3YN51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

99.502

0.821
  hapR Vibrio cholerae C6706

73.869

99.005

0.731
  hapR Vibrio cholerae strain A1552

73.869

99.005

0.731