Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   MID13_RS10690 Genome accession   NZ_CP092384
Coordinates   2414047..2415435 (-) Length   462 a.a.
NCBI ID   WP_004734031.1    Uniprot ID   A0A0T7ERT3
Organism   Vibrio gigantis strain ACE001     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2409047..2420435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID13_RS10655 (MID13_10655) moaE 2409586..2410041 (-) 456 WP_215404903.1 molybdopterin synthase catalytic subunit MoaE -
  MID13_RS10660 (MID13_10660) moaD 2410044..2410289 (-) 246 WP_055319720.1 molybdopterin synthase sulfur carrier subunit -
  MID13_RS10665 (MID13_10665) moaC 2410286..2410765 (-) 480 WP_086712939.1 cyclic pyranopterin monophosphate synthase MoaC -
  MID13_RS10670 (MID13_10670) moaB 2410778..2411290 (-) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  MID13_RS10675 (MID13_10675) moaA 2411381..2412370 (-) 990 WP_102481762.1 GTP 3',8-cyclase MoaA -
  MID13_RS10680 (MID13_10680) - 2412706..2413593 (+) 888 WP_086712941.1 YvcK family protein -
  MID13_RS10685 (MID13_10685) luxU 2413678..2414022 (-) 345 WP_048611583.1 quorum-sensing phosphorelay protein LuxU -
  MID13_RS10690 (MID13_10690) luxO 2414047..2415435 (-) 1389 WP_004734031.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  MID13_RS10695 (MID13_10695) uvrB 2415739..2417769 (-) 2031 WP_239716301.1 excinuclease ABC subunit UvrB -
  MID13_RS10705 (MID13_10705) rsxA 2418829..2419407 (+) 579 WP_004734039.1 electron transport complex subunit RsxA -
  MID13_RS10710 (MID13_10710) rsxB 2419410..2420003 (+) 594 WP_004734040.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51762.31 Da        Isoelectric Point: 6.4047

>NTDB_id=657087 MID13_RS10690 WP_004734031.1 2414047..2415435(-) (luxO) [Vibrio gigantis strain ACE001]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=657087 MID13_RS10690 WP_004734031.1 2414047..2415435(-) (luxO) [Vibrio gigantis strain ACE001]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAGGATACGGCTTCGGTAGCAGCGTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATAGTCGGCACTGGCCGCGATGCAATCGAGAGTTTGAATCATCGAA
TCCCAGACCTTATTTTATTAGATCTACGTTTGCCTGATATGACGGGTATGGACGTATTATTTGCTGTAAAACAAAAATAC
CCTGAAGTTCCTGTTATTTTCATGACGGCTCACGGCTCTATCGATACCGCCGTAGAAGCCATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAGCCGTGTGAAGCTGACCGACTCCGTATTACGGTGAACAACGCGATCCGCAAAGCCACCAAGCTTAAAA
ACAGCTCTGAACATCCGGGAAATCAGAACTATCAAGGTTTCATTGGTAGCAGCCAAACCATGCAGCAGGTTTACCGAACT
ATCGATTCTGCTGCATCAAGTAAGGCGAGCATTTTCATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCAGAAGC
GATTCATGCGGCGAGCAAGCGTGGTGACAAGCCTTTCATTGCGATTAACTGTGCGGCGATTCCTAAAGATCTGATTGAAA
GTGAGCTGTTTGGTCACGTTAAAGGCGCCTTTACTGGTGCGGCAACTGACCGCCAAGGGGCTGCTGAACTTGCTGATGGT
GGGACACTGTTCCTCGATGAGTTGTGCGAAATGGATCTTGAACTGCAAACTAAGCTTCTTCGTTTCATTCAAACCGGTAC
CTTCCAAAAAGTCGGCTCTTCAAAAATGAAGAGTGTTGATGTGCGCTTTGTTTGTGCAACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCGCTGCACTTGCCGCCATTGCGCGAG
CGCGGAGAAGATGTCATCGAGATTGCATACTCGCTACTAGGTTATATGTCGGTCGAGGAAGGGAAGGCGTTTGTACGTTT
TGCTCAAGAAGTGCTGGATCGTTTTAATCAATATGAGTGGCCGGGTAACGTTCGTCAGTTGCAAAACGTATTGCGAAACG
TGGTGGTTTTGAATAATGGTAAAGAGATTACTCTTAACATGCTTCCCCCCCCCTTGAACCAACCGATTGAAAACAGTCTG
CGATTGAAAGAGAAGCAGAATGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCTATCGA
ACAGGCCATCAAAGCATGTGATGGTAACATCCCTCGTGCGGCAGGTTTTTTAGATGTCAGTCCATCGACGATATACCGTA
AGTTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7ERT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37