Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MID02_RS17435 Genome accession   NZ_CP092383
Coordinates   3548935..3549624 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SF327     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3543935..3554624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID02_RS17400 (MID02_17400) - 3544133..3544615 (-) 483 WP_003151394.1 flagellar protein FlgN -
  MID02_RS17405 (MID02_17405) flgM 3544630..3544896 (-) 267 WP_057080258.1 flagellar biosynthesis anti-sigma factor FlgM -
  MID02_RS17410 (MID02_17410) - 3544966..3545385 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  MID02_RS17415 (MID02_17415) comFC 3545459..3546148 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  MID02_RS17420 (MID02_17420) - 3546154..3546438 (-) 285 WP_003151389.1 competence protein ComFB -
  MID02_RS17425 (MID02_17425) comFA 3546496..3547881 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  MID02_RS17430 (MID02_17430) - 3547989..3548837 (-) 849 WP_024085866.1 DegV family protein -
  MID02_RS17435 (MID02_17435) degU 3548935..3549624 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MID02_RS17440 (MID02_17440) degS 3549701..3550864 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  MID02_RS17445 (MID02_17445) - 3551087..3551734 (+) 648 WP_003151384.1 YigZ family protein -
  MID02_RS17450 (MID02_17450) - 3551739..3552953 (+) 1215 WP_057080262.1 LCP family protein -
  MID02_RS17455 (MID02_17455) - 3553043..3554119 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=657063 MID02_RS17435 WP_003219701.1 3548935..3549624(-) (degU) [Bacillus velezensis strain SF327]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=657063 MID02_RS17435 WP_003219701.1 3548935..3549624(-) (degU) [Bacillus velezensis strain SF327]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1