Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OHA64_RS27680 Genome accession   NZ_CP108242
Coordinates   6057731..6059140 (-) Length   469 a.a.
NCBI ID   WP_405617447.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00076     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6052731..6064140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA64_RS27660 (OHA64_27590) - 6053407..6053946 (-) 540 WP_053755415.1 SigE family RNA polymerase sigma factor -
  OHA64_RS27665 (OHA64_27595) - 6054169..6055104 (-) 936 WP_405617440.1 A/G-specific adenine glycosylase -
  OHA64_RS27670 (OHA64_27600) - 6055592..6056431 (+) 840 WP_405617442.1 hypothetical protein -
  OHA64_RS27675 (OHA64_27605) disA 6056525..6057649 (-) 1125 WP_405617445.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA64_RS27680 (OHA64_27610) radA 6057731..6059140 (-) 1410 WP_405617447.1 DNA repair protein RadA Machinery gene
  OHA64_RS27685 (OHA64_27615) - 6059369..6061120 (+) 1752 WP_405617449.1 BACON domain-containing protein -
  OHA64_RS27690 (OHA64_27620) - 6061237..6062085 (-) 849 WP_405617451.1 hypothetical protein -
  OHA64_RS27695 (OHA64_27625) - 6062274..6063206 (+) 933 WP_405617453.1 Ppx/GppA family phosphatase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49468.53 Da        Isoelectric Point: 7.7220

>NTDB_id=657030 OHA64_RS27680 WP_405617447.1 6057731..6059140(-) (radA) [Streptomyces sp. NBC_00076]
MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVALLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLSAVL
GHLDAVKPSLLIVDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGIVGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMKVLEVADIGDALRVLPRSRRREAPRDDEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=657030 OHA64_RS27680 WP_405617447.1 6057731..6059140(-) (radA) [Streptomyces sp. NBC_00076]
ATGGCTGCCCGTACGAAGTCCGCCAAGGAGCGCCCGTCCTACCGCTGCACCGAGTGCGGTTGGCAGACGGCCAAGTGGCT
CGGTCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGGACGACGACACCGGGCC
GCGTCACCACCTCCGCCGTGCCCATCGGCCAGGTCGACGGCCGGCAGGCGACCGCCCGCTCCACGGGCGTGCCCGAACTG
GACCGGGTACTCGGCGGCGGCCTGGTCCCCGGCGCCGTGGCGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACCCT
GCTCCTTGACGTGGCCGCCAAGTCGGCGAGCGACGAGCACCGCACGCTCTATGTGACCGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGGATCGGGGCGATCGACGACCACCTGTATCTCGCCGCGGAGACCGACCTGTCCGCCGTGCTC
GGTCACTTGGACGCGGTGAAGCCGTCGCTGCTGATCGTCGACTCGGTGCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCGCAGGTGCGGGAGGTGGCGGGGGCACTGATCCGCGCCTCCAAGGAGCGTGGGATGGCGACTCTCC
TGGTGGGCCATGTCACCAAGGACGGGGCCATCGCCGGGCCCCGCCTCCTGGAACACCTCGTGGACGTCGTGCTGAGCTTC
GAGGGTGACCGGCACGCCCGCCTGCGTCTCGTGCGAGGCGTCAAGAACCGCTACGGCGCCACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCGTCGGGCTCGCCGACCCCAGCGGCCTGTTCCTGACCCGGCGCGCCGAACCGGTGCCCG
GCACCTGCCTCACCGTCACCCTGGAGGGCCGCCGCCCCCTCGTCGCCGAGGTCCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCACCCCGGCGCACGACGTCCGGCCTGGAGACCTCCCGGGTGTCGATGATGCTCGCCGTCCTGGAACAGCGTGGAAA
AATCAGCGCGCTCGGCAAAAGGGACATCTACTCCGCGACGGTGGGCGGTGTGAAGTTGTCGGAACCCGCCGCCGACCTCG
CCGTCGCCCTCGCGCTGGCCTCGGCGGCCAGTGACACCCCGCTCCCGAAGAACCTCGTCGCGATCGGCGAGGTTGGCCTC
GCGGGCGAGGTCAGAAGGGTCACGGGGGTGCAGCGCCGACTCGCCGAAGCACACCGCCTGGGCTTCACGCACGCGCTCGT
ACCGGGCGATCCGGGCAAGGTCCCGGCGGGCATGAAGGTGCTGGAGGTCGCGGACATAGGAGACGCTCTGAGAGTCCTTC
CGCGCTCGCGTAGGCGAGAGGCCCCACGGGACGACGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

43.556

95.949

0.418
  radA Streptococcus pneumoniae D39

43.556

95.949

0.418
  radA Streptococcus pneumoniae R6

43.556

95.949

0.418
  radA Streptococcus pneumoniae TIGR4

43.556

95.949

0.418
  radA Streptococcus mitis SK321

43.556

95.949

0.418
  radA Streptococcus mitis NCTC 12261

43.556

95.949

0.418
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.046

96.588

0.416