Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHA64_RS25795 Genome accession   NZ_CP108242
Coordinates   5659719..5660318 (+) Length   199 a.a.
NCBI ID   WP_020124031.1    Uniprot ID   A0ABU2V2Q9
Organism   Streptomyces sp. NBC_00076     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5654719..5665318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA64_RS25770 (OHA64_25705) - 5655601..5656068 (-) 468 WP_405616962.1 GntR family transcriptional regulator -
  OHA64_RS25775 (OHA64_25710) - 5656396..5656539 (+) 144 WP_405616964.1 hypothetical protein -
  OHA64_RS25780 (OHA64_25715) - 5656717..5658252 (+) 1536 WP_405616966.1 substrate-binding domain-containing protein -
  OHA64_RS25785 (OHA64_25720) - 5658287..5659039 (-) 753 WP_405616968.1 SLATT domain-containing protein -
  OHA64_RS25790 (OHA64_25725) - 5659286..5659630 (+) 345 WP_405616970.1 YbaB/EbfC family nucleoid-associated protein -
  OHA64_RS25795 (OHA64_25730) recR 5659719..5660318 (+) 600 WP_020124031.1 recombination mediator RecR Machinery gene
  OHA64_RS25800 (OHA64_25735) - 5660311..5660970 (+) 660 WP_405616972.1 DUF5063 domain-containing protein -
  OHA64_RS25805 (OHA64_25740) - 5660975..5661172 (-) 198 WP_405616974.1 hypothetical protein -
  OHA64_RS25810 (OHA64_25745) - 5661171..5661422 (+) 252 WP_405616976.1 DUF397 domain-containing protein -
  OHA64_RS25815 (OHA64_25750) - 5661572..5662411 (-) 840 WP_405616978.1 PhzF family phenazine biosynthesis protein -
  OHA64_RS25820 (OHA64_25755) - 5662628..5662813 (+) 186 WP_405616980.1 hypothetical protein -
  OHA64_RS25825 (OHA64_25760) - 5662968..5663468 (+) 501 WP_405616982.1 SgcJ/EcaC family oxidoreductase -
  OHA64_RS25830 (OHA64_25765) - 5663472..5664860 (-) 1389 WP_405616984.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21830.26 Da        Isoelectric Point: 4.9908

>NTDB_id=657024 OHA64_RS25795 WP_020124031.1 5659719..5660318(+) (recR) [Streptomyces sp. NBC_00076]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCNICRDTRRDLSV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=657024 OHA64_RS25795 WP_020124031.1 5659719..5660318(+) (recR) [Streptomyces sp. NBC_00076]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGGCGGTTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAACCGACCGACGTACGGCGTCTCGCGCAGTGCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTCGCGCAGGAGGAACTGTGCAACATCTGCCGCGACACCCGCCGCGACCTCTCGGTG
ATCTGCGTGGTGGAGGAGCCGAAGGACGTCGTCGCCATCGAGCGCACGCGTGAGTTCCGGGGCAAGTACCACGTCCTGGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGTCCCGACGACCTCCGCATCAGGGAACTCCTGGCGCGTCTGGCGGACGGCA
CGGTCACGGAGCTGATCCTGGCCACCGACCCGAATCTCGAAGGCGAGGCGACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.093

97.487

0.518
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452