Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHU33_RS22050 Genome accession   NZ_CP108237
Coordinates   4748714..4749313 (-) Length   199 a.a.
NCBI ID   WP_266518689.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00079     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4743714..4754313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU33_RS22020 (OHU33_21910) - 4744197..4744892 (+) 696 WP_266518701.1 response regulator transcription factor -
  OHU33_RS22025 (OHU33_21915) - 4744892..4746262 (+) 1371 WP_266518699.1 HAMP domain-containing sensor histidine kinase -
  OHU33_RS22030 (OHU33_21920) - 4746266..4746772 (-) 507 WP_266518697.1 SgcJ/EcaC family oxidoreductase -
  OHU33_RS22035 (OHU33_21925) - 4746955..4747128 (-) 174 WP_405659624.1 hypothetical protein -
  OHU33_RS22040 (OHU33_21930) - 4747263..4747997 (+) 735 WP_266518693.1 sulfite exporter TauE/SafE family protein -
  OHU33_RS22045 (OHU33_21935) - 4748062..4748721 (-) 660 WP_266518691.1 DUF5063 domain-containing protein -
  OHU33_RS22050 (OHU33_21940) recR 4748714..4749313 (-) 600 WP_266518689.1 recombination mediator RecR Machinery gene
  OHU33_RS22055 (OHU33_21945) - 4749373..4749717 (-) 345 WP_266518687.1 YbaB/EbfC family nucleoid-associated protein -
  OHU33_RS22060 (OHU33_21950) - 4749986..4750735 (+) 750 WP_266588890.1 SLATT domain-containing protein -
  OHU33_RS22065 (OHU33_21955) - 4750763..4751001 (-) 239 Protein_4385 phosphate ABC transporter substrate-binding protein -
  OHU33_RS22070 (OHU33_21960) - 4751058..4752992 (-) 1935 WP_266925623.1 serine/threonine-protein kinase -
  OHU33_RS22075 (OHU33_21965) - 4753078..4753536 (-) 459 WP_266518681.1 MarR family winged helix-turn-helix transcriptional regulator -
  OHU33_RS22080 (OHU33_21970) - 4753533..4754135 (-) 603 WP_266518679.1 type 1 glutamine amidotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21798.16 Da        Isoelectric Point: 4.9909

>NTDB_id=656939 OHU33_RS22050 WP_266518689.1 4748714..4749313(-) (recR) [Streptomyces sp. NBC_00079]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNIAQEELCNICRDTRRDASV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=656939 OHU33_RS22050 WP_266518689.1 4748714..4749313(-) (recR) [Streptomyces sp. NBC_00079]
TTGTACGAAGGCGTGGTGCAGGACCTGATCGACGAACTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCCCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAACCGACGGACGTACGGCGCCTCGCGCAGGCCCTCATGGAGGTCAAGGCGAAGGTCC
GCTTCTGTGCGACCTGCGGCAACATCGCGCAGGAAGAGCTGTGCAACATCTGCCGCGACACGCGCCGCGACGCCTCCGTC
ATCTGCGTGGTGGAGGAGCCGAAGGACGTGGTCGCCATCGAGCGCACACGTGAGTTCCGGGGCCGCTACCACGTCCTGGG
CGGAGCGATCAGCCCCATCGAGGGTGTGGGTCCCGACGACCTGCGTATACGAGAACTTCTCGCGCGGTTGGCCGACGGGA
CGGTCACGGAACTGATCCTGGCCACGGACCCGAACCTGGAGGGCGAGGCCACAGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452