Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OHU33_RS21130 Genome accession   NZ_CP108237
Coordinates   4547552..4548961 (+) Length   469 a.a.
NCBI ID   WP_266519054.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00079     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4542552..4553961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU33_RS21110 (OHU33_21000) - 4542580..4543404 (-) 825 WP_266519063.1 sugar phosphate isomerase/epimerase -
  OHU33_RS21115 (OHU33_21005) - 4543552..4544484 (-) 933 WP_266519061.1 Ppx/GppA phosphatase family protein -
  OHU33_RS21120 (OHU33_21010) - 4544556..4545422 (+) 867 WP_266519059.1 hypothetical protein -
  OHU33_RS21125 (OHU33_21015) - 4545638..4547332 (-) 1695 WP_266519056.1 BACON domain-containing protein -
  OHU33_RS21130 (OHU33_21020) radA 4547552..4548961 (+) 1410 WP_266519054.1 DNA repair protein RadA Machinery gene
  OHU33_RS21135 (OHU33_21025) disA 4549043..4550167 (+) 1125 WP_266519052.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHU33_RS21140 (OHU33_21030) - 4550305..4550757 (+) 453 WP_266519050.1 RICIN domain-containing protein -
  OHU33_RS21145 (OHU33_21035) - 4550856..4551668 (-) 813 WP_266844664.1 hypothetical protein -
  OHU33_RS21150 (OHU33_21040) - 4551835..4552782 (+) 948 WP_266519043.1 A/G-specific adenine glycosylase -
  OHU33_RS21155 (OHU33_21045) - 4553045..4553584 (+) 540 WP_266519041.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49797.99 Da        Isoelectric Point: 8.0018

>NTDB_id=656933 OHU33_RS21130 WP_266519054.1 4547552..4548961(+) (radA) [Streptomyces sp. NBC_00079]
MAARTKTTKDRPSYRCKECGWQTAKWLGRCPECQAWGTIEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRMRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRVSKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPPGMKVLEVADIGDALRVLPRSRRREAPQDQEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=656933 OHU33_RS21130 WP_266519054.1 4547552..4548961(+) (radA) [Streptomyces sp. NBC_00079]
ATGGCTGCCCGTACCAAGACCACCAAGGACCGTCCGTCCTACCGCTGCAAGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGATCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGACTCCGGGCC
GAGTGACCACGTCCGCGGTGCCCATCGGCCAGGTCGACGGCCGGCAGGCCACCGCCCGCTCGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTCGTGCCCGGCGCGGTGGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCGACGCT
GCTGCTGGATGTCGCGGCCAAGTCGGCGAGCGACGAGCACCGCACGCTGTACGTCACGGGTGAGGAGTCGGCGAGCCAGG
TGCGGATGCGCGCCGACCGCATCAAGGCCATCGACGACCATCTGTACCTGGCCGCCGAGACCGATCTGGCCGCCGTGCTC
GGCCACTTGGACGCGGTGAAGCCGTCGCTTCTCATCCTCGACTCCGTGCAGACCGTCGCCTCCCCGGAGATCGACGGCGC
CCCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCCGGCGCGCTCATCCGCGTCTCCAAGGAGCGCGGCATGTCGACGCTCC
TTGTGGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCGCGCCTTCTCGAACACCTCGTGGACGTCGTCCTGAGCTTC
GAGGGAGACCGGCACGCTCGCCTGCGTCTCGTACGGGGCGTCAAGAACCGCTACGGCGCCACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACAGGCCTTGCCGACCCAAGCGGACTTTTCCTGACCAGGCGTGACGAACCGGTCCCCG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCCCTCGTCGCCGAGGTCCAGGCGCTCACCGTCGACTCACAGATC
CCCTCCCCACGGCGTACGACGTCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTCGCGGTGCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGAGTGAAGCTCTCCGAGCCCGCCGCCGACCTCG
CCGTCGCCCTCGCGCTGGCGTCGGCCGCGAGCGACACCCCTCTGCCCAAGAACCTGGTCGCGATCGGTGAAGTCGGCCTC
GCGGGCGAGGTGAGACGGGTCACGGGCGTCCAGCGCCGGCTCGCCGAAGCGCACCGTCTGGGCTTCACGCACGCGCTCGT
TCCGGGCGACCCCGGCAAGATCCCTCCGGGCATGAAGGTCCTGGAAGTAGCCGACATAGGGGACGCTCTGAGGGTCCTTC
CGCGCTCCCGTCGCCGAGAGGCCCCACAGGACCAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.207

95.736

0.414
  radA Streptococcus mitis NCTC 12261

43.207

95.736

0.414
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.257

96.375

0.407