Detailed information    

insolico Bioinformatically predicted

Overview


Name   disA   Type   Machinery gene
Locus tag   OHU34_RS18540 Genome accession   NZ_CP108235
Coordinates   4182414..4183538 (+) Length   374 a.a.
NCBI ID   WP_020132463.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00080     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 4177414..4188538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU34_RS18525 (OHU34_18530) - 4177862..4178740 (+) 879 WP_230194975.1 hypothetical protein -
  OHU34_RS18530 (OHU34_18535) - 4178864..4180648 (-) 1785 WP_142265569.1 BACON domain-containing protein -
  OHU34_RS18535 (OHU34_18540) radA/sms 4180924..4182333 (+) 1410 WP_020132462.1 DNA repair protein RadA Machinery gene
  OHU34_RS18540 (OHU34_18545) disA 4182414..4183538 (+) 1125 WP_020132463.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHU34_RS18545 (OHU34_18550) - 4183561..4184403 (-) 843 WP_405767306.1 hypothetical protein -
  OHU34_RS18550 (OHU34_18555) - 4184662..4185594 (+) 933 WP_142265568.1 A/G-specific adenine glycosylase -
  OHU34_RS18555 (OHU34_18560) - 4185895..4186437 (+) 543 WP_020132466.1 SigE family RNA polymerase sigma factor -
  OHU34_RS18560 (OHU34_18565) - 4186422..4187081 (+) 660 WP_142265567.1 hypothetical protein -
  OHU34_RS18565 (OHU34_18570) cseB 4187392..4188093 (+) 702 WP_020132468.1 two-component system response regulator CseB -

Sequence


Protein


Download         Length: 374 a.a.        Molecular weight: 39985.73 Da        Isoelectric Point: 4.9989

>NTDB_id=656842 OHU34_RS18540 WP_020132463.1 4182414..4183538(+) (disA) [Streptomyces sp. NBC_00080]
MAANDRAAAPGKSGGSSGADGLMRAALSAVAPGTALRDGLERILRGNTGGLIVLGSDKTVEAMCTGGFVLDVEFAATRLR
ELCKLDGGIVVSSDLSKILRAGVQLVPDPTIPTEETGTRHRTADRVSKQVGFPIVSVSQSMRLIALYVDGQRRVLEDSAA
ILSRANQALATLERYKLRLDEVAGTLSALEIEDLVTVRDVSAVAQRLEMVRRIATEIAEYVVELGTDGRLLALQLDELIA
GVEPERELVVRDYVPEPTAKRSRTVDEALYELNALSHAELLELSTVARALGYTGSPEALDSAVSPRGFRLLAKVPRLPGA
IIDRLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGLSRLAESSILERYV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=656842 OHU34_RS18540 WP_020132463.1 4182414..4183538(+) (disA) [Streptomyces sp. NBC_00080]
GTGGCAGCCAACGACCGGGCGGCAGCTCCCGGAAAGTCCGGTGGGAGTTCCGGTGCCGACGGCCTGATGCGCGCCGCGCT
GAGCGCGGTGGCTCCCGGCACGGCCCTGCGCGACGGCCTGGAGCGGATCCTTCGCGGCAACACCGGCGGACTCATCGTGC
TGGGCTCCGACAAGACGGTCGAGGCGATGTGCACGGGCGGGTTCGTCCTCGACGTGGAGTTCGCGGCCACGCGCCTGCGT
GAGCTGTGCAAGCTCGACGGCGGCATCGTGGTCTCCTCCGACCTGTCGAAGATCCTCCGGGCCGGCGTCCAGCTGGTGCC
GGACCCCACGATCCCCACGGAGGAGACGGGCACCCGGCACCGCACGGCGGACCGGGTCAGCAAGCAGGTGGGCTTCCCGA
TCGTCTCCGTCTCCCAGTCCATGCGGCTGATCGCCCTGTACGTCGACGGCCAGCGCCGCGTCCTGGAGGACTCCGCGGCG
ATCCTGTCCCGCGCGAACCAGGCGCTCGCGACCCTGGAGCGCTACAAGCTCCGCCTGGACGAGGTCGCGGGAACGTTGTC
AGCGCTGGAGATCGAGGACCTGGTGACGGTCCGGGACGTCTCCGCGGTGGCCCAGCGCCTGGAGATGGTGCGCCGCATCG
CCACCGAAATCGCCGAATACGTGGTCGAACTGGGCACGGACGGGCGGCTGCTCGCCCTCCAGCTCGACGAGTTGATCGCG
GGCGTGGAGCCGGAGCGCGAGCTGGTGGTCCGGGACTACGTGCCCGAGCCCACGGCCAAGCGGTCCCGCACGGTCGACGA
GGCGCTGTACGAGCTGAACGCGCTCAGCCACGCCGAGCTCCTCGAACTGTCCACGGTGGCCCGCGCGTTGGGCTACACCG
GATCTCCCGAGGCCCTCGATTCGGCGGTCTCGCCCCGCGGCTTCCGCCTGCTGGCGAAGGTGCCGCGGCTGCCCGGCGCG
ATCATCGACCGTCTCGTCGAACACTTCGGCGGCCTCCAGAAGCTCCTCGCCGCGAGCGTCGACGACCTTCAGACGGTGGA
CGGCGTGGGCGAGGCACGGGCCCGGAGCGTCCGCGAGGGCCTGTCACGGCTGGCGGAGTCGTCGATCCTGGAGCGGTACG
TCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  disA Bacillus subtilis subsp. subtilis str. 168

45.429

96.524

0.438