Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHU34_RS18535 Genome accession   NZ_CP108235
Coordinates   4180924..4182333 (+) Length   469 a.a.
NCBI ID   WP_020132462.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00080     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4175924..4187333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU34_RS18520 (OHU34_18525) - 4176858..4177790 (-) 933 WP_142265571.1 Ppx/GppA phosphatase family protein -
  OHU34_RS18525 (OHU34_18530) - 4177862..4178740 (+) 879 WP_230194975.1 hypothetical protein -
  OHU34_RS18530 (OHU34_18535) - 4178864..4180648 (-) 1785 WP_142265569.1 BACON domain-containing protein -
  OHU34_RS18535 (OHU34_18540) radA/sms 4180924..4182333 (+) 1410 WP_020132462.1 DNA repair protein RadA Machinery gene
  OHU34_RS18540 (OHU34_18545) disA 4182414..4183538 (+) 1125 WP_020132463.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHU34_RS18545 (OHU34_18550) - 4183561..4184403 (-) 843 WP_405767306.1 hypothetical protein -
  OHU34_RS18550 (OHU34_18555) - 4184662..4185594 (+) 933 WP_142265568.1 A/G-specific adenine glycosylase -
  OHU34_RS18555 (OHU34_18560) - 4185895..4186437 (+) 543 WP_020132466.1 SigE family RNA polymerase sigma factor -
  OHU34_RS18560 (OHU34_18565) - 4186422..4187081 (+) 660 WP_142265567.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49679.82 Da        Isoelectric Point: 7.7220

>NTDB_id=656841 OHU34_RS18535 WP_020132462.1 4180924..4182333(+) (radA/sms) [Streptomyces sp. NBC_00080]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTTPGRVTTSALPIGQVDGRTATARPTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRMRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPAGMKVLEVADIGDALRVLPRSRRRDAPRDAEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=656841 OHU34_RS18535 WP_020132462.1 4180924..4182333(+) (radA/sms) [Streptomyces sp. NBC_00080]
ATGGCTGCCCGCACGAAGACCACCAAGGACCGTCCGTCCTACCGCTGCACGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCACGCCCGCGGTCCGTACGACGACGCCGGGGC
GCGTCACGACGTCCGCCCTGCCCATCGGCCAGGTCGACGGGCGGACGGCCACCGCCCGCCCCACCGGCGTGCCCGAGCTG
GACCGCGTGCTGGGCGGCGGACTCGTACCGGGCGCGGTCGTCCTGCTCGCCGGCGAGCCGGGCGTCGGCAAGTCGACCCT
CCTGCTGGACGTGGCGGCCAAGTCGGCGAGCGACGAACACCGCACGCTGTATGTGACCGGCGAGGAATCGGCCTCCCAGG
TCCGCATGCGCGCCGACCGCATCGGCGCCATCGACGACCACCTGTATCTGGCCGCCGAGACCGACCTGGCGGCCGTCCTG
GGCCACTTGGACGCGGTGAAGCCGTCACTGCTGATCATGGACTCGGTGCAGACCGTGGCCTCCCCGGAGATCGACGGAGC
GCCCGGCGGCATGGCCCAGGTCCGGGAGGTCGCCGGCGCCCTGATCCGCGCCTCCAAGGAACGCGGCATGTCCACGCTTC
TGGTGGGCCATGTCACGAAGGACGGCGCGATCGCCGGCCCCCGCCTCCTCGAACACCTCGTGGACGTCGTGCTGAGCTTC
GAGGGAGACCGCCACGCTCGCCTGCGCCTGGTGCGGGGCGTCAAGAACCGCTACGGCGCCACCGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATTACGGGCCTTGCCGACCCAAGCGGACTTTTCCTGACCCGACGTGACGAACCGGTCCCGG
GTACCTGCCTGACGGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAAGTGCAGGCCCTCACCGTCGACTCGCAGATC
CCCTCACCCCGGCGCACGACGTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAGCAACGCGGCAA
GATCAGCGCACTGGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGAGTGAAGCTCTCGGAGCCCGCCGCGGACCTGG
CGATCGCCCTCGCCCTGGCCTCCGCCGCGAGCGACACCCCGCTGCCCAAGAACCTGGTCGCGATCGGCGAAGTCGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGGCTCTCGGAGGCACACCGTCTGGGCTTCACCCACGCGCTCGT
GCCGAGCGATCCAGGCAAGATCCCCGCGGGCATGAAGGTCCTGGAAGTCGCGGACATAGGGGACGCCCTGCGGGTCCTGC
CGCGCTCCCGTCGACGAGACGCCCCACGGGATGCGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus mitis SK321

42.699

96.375

0.412
  radA Streptococcus mitis NCTC 12261

42.699

96.375

0.412
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409