Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG361_RS18620 Genome accession   NZ_CP108224
Coordinates   4204272..4204871 (-) Length   199 a.a.
NCBI ID   WP_017240166.1    Uniprot ID   A0A4Y3RLZ8
Organism   Streptomyces sp. NBC_00090     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4199272..4209871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG361_RS18600 (OG361_18605) - 4199626..4200897 (-) 1272 WP_405854961.1 aspartate kinase -
  OG361_RS18605 (OG361_18610) - 4201013..4202965 (-) 1953 WP_405854963.1 tetratricopeptide repeat protein -
  OG361_RS18610 (OG361_18615) - 4202962..4203453 (-) 492 WP_405854965.1 hypothetical protein -
  OG361_RS18615 (OG361_18620) - 4203574..4204236 (-) 663 WP_384563830.1 DUF5063 domain-containing protein -
  OG361_RS18620 (OG361_18625) recR 4204272..4204871 (-) 600 WP_017240166.1 recombination mediator RecR Machinery gene
  OG361_RS18625 (OG361_18630) - 4204962..4205297 (-) 336 WP_405854968.1 YbaB/EbfC family nucleoid-associated protein -
  OG361_RS18630 (OG361_18635) - 4205568..4206290 (+) 723 WP_405862326.1 SLATT domain-containing protein -
  OG361_RS18635 (OG361_18640) - 4206430..4207080 (-) 651 WP_384563836.1 hypothetical protein -
  OG361_RS18640 (OG361_18645) - 4207228..4207941 (-) 714 WP_405854970.1 GntR family transcriptional regulator -
  OG361_RS18645 (OG361_18650) - 4208061..4209425 (-) 1365 WP_405854972.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21867.25 Da        Isoelectric Point: 5.1616

>NTDB_id=656675 OG361_RS18620 WP_017240166.1 4204272..4204871(-) (recR) [Streptomyces sp. NBC_00090]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKEKVRFCAVCGNVAQQEQCNICRDPRRDLTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=656675 OG361_RS18620 WP_017240166.1 4204272..4204871(-) (recR) [Streptomyces sp. NBC_00090]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGACTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCCACCGACGTACGGCGGCTGGCGCACGCCCTCCTGGAGGTCAAGGAGAAGGTCA
GGTTCTGCGCGGTCTGCGGCAATGTGGCGCAGCAGGAGCAGTGCAACATCTGCCGGGATCCGAGGCGCGACCTGACCGTC
ATCTGTGTGGTCGAGGAGCCGAAGGACGTCGTGGCGATCGAACGGACTCGCGAGTTCCGGGGGCGTTACCACGTCCTCGG
CGGTGCGATCAGCCCGATCGAGGGCGTCGGCCCTGACGACCTGCGCATCCGCGAGCTCCTCGCACGGCTCGCGGACGGCG
CCGTCACCGAACTGATCCTCGCGACCGACCCGAACCTGGAGGGCGAGGCCACCGCGACCTACCTGGCGCGGATGATCAAG
CCCATGGGGCTGAAGGTGACCCGGCTCGCGAGCGGGCTCCCGGTCGGCGGCGACCTGGAGTACGCCGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGCGGAGGCTGCTAGATGTATGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3RLZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467