Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MIS44_RS00675 Genome accession   NZ_CP092357
Coordinates   121815..123197 (+) Length   460 a.a.
NCBI ID   WP_249448769.1    Uniprot ID   -
Organism   Wielerella bovis strain 10LB456     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 116815..128197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS44_RS00650 (MIS44_00650) dprA 117095..118297 (+) 1203 WP_249448765.1 DNA-processing protein DprA Machinery gene
  MIS44_RS00655 (MIS44_00655) tsf 118599..119453 (-) 855 WP_249442782.1 translation elongation factor Ts -
  MIS44_RS00660 (MIS44_00660) rpsB 119539..120267 (-) 729 WP_249448766.1 30S ribosomal protein S2 -
  MIS44_RS00665 (MIS44_00665) - 120282..120521 (+) 240 WP_249448767.1 hypothetical protein -
  MIS44_RS00670 (MIS44_00670) - 120539..121717 (+) 1179 WP_249448768.1 phosphoglycerate kinase -
  MIS44_RS00675 (MIS44_00675) radA 121815..123197 (+) 1383 WP_249448769.1 DNA repair protein RadA Machinery gene
  MIS44_RS00680 (MIS44_00680) - 123273..123692 (+) 420 WP_249442785.1 SMI1/KNR4 family protein -
  MIS44_RS00685 (MIS44_00685) - 123749..124768 (-) 1020 WP_249448130.1 IS110 family transposase -
  MIS44_RS00690 (MIS44_00690) - 125173..125469 (+) 297 Protein_131 transposase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49507.20 Da        Isoelectric Point: 6.9445

>NTDB_id=656663 MIS44_RS00675 WP_249448769.1 121815..123197(+) (radA) [Wielerella bovis strain 10LB456]
MAKAPKTLYQCTECGGTSPKWVGKCPHCGEWNTLQENIAAPEPKNARFQSWAAETTQVQKLAEVTATEVPREATGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIALMAKTRNVLYISGEESAQQVALRAQRLGLNAEGVNLLAEIRLEAIQAA
LKQHAPSVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRIAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNHRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLASYRDDVAGSCVLVTQEGTRPLLVEIQSLVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKIGEPAADLAAVLAMVSSFRNKPLPEKMVAFGEIGLSGE
IRPVPRGQERLKEAEKLGFKRAIVPKANMPRHANEFPKLKIYGVESLQEAVMLCRDLVDE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=656663 MIS44_RS00675 WP_249448769.1 121815..123197(+) (radA) [Wielerella bovis strain 10LB456]
ATGGCAAAAGCCCCCAAAACCCTTTACCAATGCACAGAATGCGGCGGCACATCGCCCAAATGGGTCGGCAAATGCCCCCA
TTGCGGCGAATGGAACACGCTCCAAGAAAACATCGCCGCGCCCGAACCGAAAAACGCCCGTTTCCAATCGTGGGCAGCCG
AAACCACCCAAGTGCAAAAATTAGCCGAAGTAACCGCCACAGAAGTGCCACGCGAAGCCACAGGCATGGGCGAATTAGAC
CGCGTGTTGGGCGGCGGTTTGGTGGACGGTGCGGTGATTTTATTGGGCGGCGACCCAGGGATTGGCAAATCCACCCTACT
TTTACAAACCATTGCTTTAATGGCGAAAACGCGCAATGTGCTGTACATTTCAGGCGAAGAATCCGCCCAACAAGTCGCCC
TGCGCGCCCAGCGTTTGGGTTTGAACGCGGAAGGCGTGAATTTGCTTGCCGAAATCCGTTTGGAAGCCATTCAGGCAGCC
TTAAAACAACACGCGCCCAGCGTGGTCGTGATTGACTCCATTCAAACCATGTATTCCGACCAAATCACGTCCGCCCCCGG
CTCGGTGTCGCAAGTGCGTGAATGTGCCGCCCAGCTCACGCGCATCGCCAAACAAATGGGCATTGCCATGATTTTTGTCG
GACACGTTACCAAAGACGGTGCCATCGCAGGCCCGCGCGTGTTGGAACACATGGTGGATACCGTGTTGTATTTTGAAGGC
GACCAGCATTCCAATCATCGCATGATACGCGCGATTAAAAATCGCTTTGGCGCGGCAAACGAATTGGGCGTGTTCGCCAT
GACCGAAACGGGTTTGAAAGGCGTGTCCAATCCGTCCGCGATTTTTTTGGCGAGTTATCGGGACGATGTGGCGGGTTCGT
GCGTCTTGGTAACGCAGGAAGGAACGCGCCCATTATTGGTGGAAATTCAATCGCTTGTAGATGATGCGCACGGTTTCACG
CCCAAACGCTTAACGGTCGGTTTAGAACAAAACCGTTTGGCGATGTTGCTGGCTGTGCTGAACCGTCATGCTGGGATTGC
GTGTTTTGACCAAGATGTGTTTTTGAATGCGGTGGGCGGCGTGAAAATTGGCGAACCTGCGGCGGATTTGGCGGCGGTGT
TGGCGATGGTTTCCAGTTTCAGAAACAAGCCTTTACCTGAAAAAATGGTGGCGTTTGGCGAAATCGGTTTGAGTGGCGAA
ATCCGCCCCGTGCCGCGTGGACAAGAACGTTTGAAAGAAGCAGAGAAATTGGGTTTCAAACGCGCCATTGTGCCGAAAGC
GAATATGCCGCGCCATGCCAACGAGTTCCCCAAATTAAAAATTTATGGCGTGGAAAGTTTGCAAGAAGCGGTTATGTTGT
GTCGGGATTTGGTGGATGAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(78-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.096

99.13

0.507
  radA Streptococcus pneumoniae Rx1

48.673

98.261

0.478
  radA Streptococcus pneumoniae D39

48.673

98.261

0.478
  radA Streptococcus pneumoniae TIGR4

48.673

98.261

0.478
  radA Streptococcus pneumoniae R6

48.673

98.261

0.478
  radA Streptococcus mitis NCTC 12261

48.451

98.261

0.476
  radA Streptococcus mitis SK321

48.337

98.043

0.474