Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG904_RS16620 Genome accession   NZ_CP108221
Coordinates   3775031..3776455 (-) Length   474 a.a.
NCBI ID   WP_405491660.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00096     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3770031..3781455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG904_RS16595 (OG904_16585) - 3770090..3770974 (-) 885 Protein_3264 A/G-specific adenine glycosylase -
  OG904_RS16600 (OG904_16590) - 3770998..3771612 (-) 615 WP_405491654.1 phosphatase PAP2 family protein -
  OG904_RS16605 (OG904_16595) - 3771773..3772600 (+) 828 WP_405491656.1 hypothetical protein -
  OG904_RS16610 (OG904_16600) - 3772868..3773742 (+) 875 WP_405491658.1 IS5 family transposase -
  OG904_RS16615 (OG904_16605) disA 3773764..3774888 (-) 1125 WP_281209182.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG904_RS16620 (OG904_16610) radA/sms 3775031..3776455 (-) 1425 WP_405491660.1 DNA repair protein RadA Machinery gene
  OG904_RS16625 (OG904_16615) - 3776638..3778530 (+) 1893 WP_405491662.1 BACON domain-containing protein -
  OG904_RS16630 (OG904_16620) - 3778551..3779426 (-) 876 WP_405491663.1 hypothetical protein -
  OG904_RS16635 (OG904_16625) - 3779490..3780419 (+) 930 WP_405491665.1 Ppx/GppA family phosphatase -
  OG904_RS16640 (OG904_16630) - 3780582..3781415 (+) 834 WP_405491667.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 49766.02 Da        Isoelectric Point: 8.2474

>NTDB_id=656604 OG904_RS16620 WP_405491660.1 3775031..3776455(-) (radA/sms) [Streptomyces sp. NBC_00096]
MAAARTSRSSAKDRPSYRCTECGYSTAKWLGRCPECQAWGTVEELGGAPAIRTTAAGRVTTAAVPIGQVDVRTATARSTG
VDELDRVLGGGLIPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRAERIKALSDHLYLAAETDL
SAVLGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDV
VLSFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRTEAVPGTCLTVTLEGKRPLVAEVQALTV
DSQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYTATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIG
EVGLAGEVRRVTGVQRRLAEAYRLGFTHALVPVDPGKVPAGMKVTEVADMGDALRVLPRGRTRTRQDPKETAQG

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=656604 OG904_RS16620 WP_405491660.1 3775031..3776455(-) (radA/sms) [Streptomyces sp. NBC_00096]
ATGGCTGCTGCCCGTACATCCCGTTCGTCCGCCAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGGTACTCCACCGC
CAAGTGGCTCGGCCGGTGCCCCGAGTGCCAGGCCTGGGGCACCGTCGAGGAGCTGGGCGGGGCGCCCGCGATCCGGACCA
CCGCGGCCGGCCGGGTCACCACGGCCGCCGTGCCGATCGGGCAGGTCGACGTCAGGACCGCGACCGCGCGCAGCACCGGC
GTGGACGAGCTGGACCGGGTGCTGGGCGGCGGGCTGATCCCCGGGGCGGTGGTCCTGCTCGCCGGCGAGCCGGGCGTGGG
CAAGTCCACGCTGCTGCTCGACGTCGCGGCGAAGGCGGCCAGCGACGAGCACCGCACGCTGTACGTCACGGGCGAGGAGT
CGGCGAGCCAGGTGCGGCTGCGGGCCGAGCGGATCAAGGCCCTCAGCGACCACCTCTACCTCGCCGCCGAGACCGACCTG
TCCGCGGTCCTCGGGCACCTCGACGCGGTGAAGCCCTCGCTGCTGATCCTGGACTCCGTACAGACCGTGGCCTCCCCCGA
GATCGACGGCGCGCCCGGCGGCATGGCGCAGGTCCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGA
TGTCCACGCTGCTCGTCGGCCACGTCACCAAGGACGGGGCGATCGCCGGTCCCCGGCTGCTGGAACACCTCGTGGACGTG
GTCCTGAGCTTCGAGGGCGACCGGCACGCGCGGCTGCGCCTGGTCCGCGGTGTGAAGAACCGGTACGGCGCGACGGACGA
GGTCGGCTGCTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGCCGCACCG
AGGCCGTCCCCGGCACCTGTCTGACGGTGACCCTGGAGGGCAAGCGTCCGCTGGTCGCCGAGGTGCAGGCGCTGACGGTG
GACTCGCAGATCCCCTCGCCGCGCCGGACCACTTCCGGGCTGGAGACCTCGCGGGTCTCGATGATGCTGGCGGTGCTGGA
GCAGCGCGGGCGGATCACGGCGCTCGGCAAGCGGGACATCTACACCGCGACGGTGGGCGGGGTGAAGCTCACCGAGCCGG
CCGCCGACCTGGCCGTCGCGCTGGCCCTGGCCTCGGCGGCCAGCGACGTGCCGCTCCCGAAGAACCTGGTCGCCATCGGG
GAGGTCGGTCTCGCGGGCGAGGTCCGGCGGGTGACGGGCGTGCAGCGGCGGCTCGCGGAGGCGTACCGGCTCGGGTTCAC
GCACGCGCTGGTGCCGGTGGACCCGGGGAAGGTGCCGGCCGGGATGAAGGTGACGGAGGTCGCCGACATGGGCGATGCGC
TACGGGTCCTGCCGCGCGGGCGGACGCGTACCCGGCAGGATCCGAAAGAGACGGCCCAGGGCTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(374-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(17-44)

AAA domain (AAA_25)

(86-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.384

95.57

0.405
  radA Streptococcus mitis SK321

43.868

89.451

0.392
  radA Streptococcus pneumoniae Rx1

43.868

89.451

0.392
  radA Streptococcus pneumoniae D39

43.868

89.451

0.392
  radA Streptococcus pneumoniae R6

43.868

89.451

0.392
  radA Streptococcus pneumoniae TIGR4

43.868

89.451

0.392
  radA Streptococcus mitis NCTC 12261

43.868

89.451

0.392