Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG904_RS15770 Genome accession   NZ_CP108221
Coordinates   3583733..3584332 (+) Length   199 a.a.
NCBI ID   WP_328299989.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00096     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3578733..3589332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG904_RS15750 (OG904_15745) - 3578755..3581403 (+) 2649 WP_405491363.1 glycosyltransferase 87 family protein -
  OG904_RS15755 (OG904_15750) - 3581524..3582174 (+) 651 WP_405491365.1 hypothetical protein -
  OG904_RS15760 (OG904_15755) - 3582308..3583033 (-) 726 WP_405491367.1 SLATT domain-containing protein -
  OG904_RS15765 (OG904_15760) - 3583301..3583642 (+) 342 WP_405491369.1 YbaB/EbfC family nucleoid-associated protein -
  OG904_RS15770 (OG904_15765) recR 3583733..3584332 (+) 600 WP_328299989.1 recombination mediator RecR Machinery gene
  OG904_RS15775 (OG904_15770) - 3584325..3584972 (+) 648 WP_405491372.1 DUF5063 domain-containing protein -
  OG904_RS15780 (OG904_15775) - 3585094..3586368 (+) 1275 WP_405491374.1 aspartate kinase -
  OG904_RS15785 (OG904_15780) - 3586365..3587453 (+) 1089 WP_405491376.1 aspartate-semialdehyde dehydrogenase -
  OG904_RS15790 (OG904_15785) - 3587715..3588395 (+) 681 WP_405498043.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21902.25 Da        Isoelectric Point: 5.1721

>NTDB_id=656599 OG904_RS15770 WP_328299989.1 3583733..3584332(+) (recR) [Streptomyces sp. NBC_00096]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHTLLEVKDKVRFCAVCGNVAQEERCNICRDPRRDLTV
ICVVEESKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=656599 OG904_RS15770 WP_328299989.1 3583733..3584332(+) (recR) [Streptomyces sp. NBC_00096]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGATGTCCGCCGTCTCGCGCACACGCTGCTCGAGGTCAAGGACAAGGTCC
GGTTCTGTGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCAACATCTGCCGCGACCCGCGCCGCGATCTCACGGTC
ATCTGTGTGGTCGAGGAGTCGAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCCGGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGGGAGCTGCTGGCGCGGCTCGCCGACGGCG
CGGTCACCGAGCTGATCCTCGCGACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472