Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG786_RS14030 Genome accession   NZ_CP108217
Coordinates   3341432..3342031 (-) Length   199 a.a.
NCBI ID   WP_275492929.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3336432..3347031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG786_RS14010 (OG786_14040) - 3336892..3338247 (-) 1356 WP_327268848.1 hypothetical protein -
  OG786_RS14015 (OG786_14045) - 3338942..3339589 (-) 648 WP_405458169.1 TetR/AcrR family transcriptional regulator -
  OG786_RS14020 (OG786_14050) - 3339752..3340519 (+) 768 WP_327268850.1 SDR family NAD(P)-dependent oxidoreductase -
  OG786_RS14025 (OG786_14055) - 3340707..3341366 (-) 660 WP_275492928.1 DUF5063 domain-containing protein -
  OG786_RS14030 (OG786_14060) recR 3341432..3342031 (-) 600 WP_275492929.1 recombination mediator RecR Machinery gene
  OG786_RS14035 (OG786_14065) - 3342166..3342501 (-) 336 WP_275492930.1 YbaB/EbfC family nucleoid-associated protein -
  OG786_RS14040 (OG786_14070) - 3342870..3343682 (+) 813 WP_327268851.1 SLATT domain-containing protein -
  OG786_RS14045 (OG786_14075) - 3343722..3344372 (-) 651 WP_327268852.1 hypothetical protein -
  OG786_RS14050 (OG786_14080) - 3344722..3345435 (-) 714 WP_275492933.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21903.20 Da        Isoelectric Point: 5.1558

>NTDB_id=656526 OG786_RS14030 WP_275492929.1 3341432..3342031(-) (recR) [Streptomyces sp. NBC_00101]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAHALLEVKDKVRFCSICGNVAQQEQCNICRDTRRDLSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=656526 OG786_RS14030 WP_275492929.1 3341432..3342031(-) (recR) [Streptomyces sp. NBC_00101]
TTGTACGAAGGCGTTGTTCAGGACCTCATCGACGAACTGGGCAGGCTCCCGGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTTCTGCAGGCGGAGCCGACCGATGTCCGGCGCCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GCTTCTGCTCGATCTGCGGCAACGTCGCGCAGCAGGAGCAGTGCAACATCTGCCGGGACACCCGTCGTGACCTGTCGGTC
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCCGCTACCACGTGCTGGG
CGGTGCGATCAGTCCCATCGAGGGTGTCGGCCCCGACGATCTGCGCATCCGTGAGCTGCTCGCCCGGCTCGCCGACGGCT
CCATCACCGAGCTGATCCTGGCGACCGACCCGAACCTCGAGGGCGAGGCCACCGCGACGTATCTGGCGCGGATGGTCAAG
CCGATGGGGCTCCGCGTCACCCGTCTCGCCAGTGGTCTGCCCGTGGGCGGGGACCTGGAGTACGCGGACGAAGTGACCCT
GGGCCGCGCGTTCGAGGGGAGGCGGCTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457