Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG786_RS13225 Genome accession   NZ_CP108217
Coordinates   3153830..3155242 (+) Length   470 a.a.
NCBI ID   WP_275492804.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3148830..3160242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG786_RS13210 (OG786_13245) - 3149348..3150196 (+) 849 WP_275492801.1 hypothetical protein -
  OG786_RS13215 (OG786_13250) - 3150372..3152468 (-) 2097 WP_405458010.1 BACON domain-containing protein -
  OG786_RS13220 (OG786_13255) - 3152859..3153722 (-) 864 WP_327268721.1 class I SAM-dependent methyltransferase -
  OG786_RS13225 (OG786_13260) radA/sms 3153830..3155242 (+) 1413 WP_275492804.1 DNA repair protein RadA Machinery gene
  OG786_RS13230 (OG786_13265) disA 3155323..3156447 (+) 1125 WP_275492805.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG786_RS13235 (OG786_13270) - 3156561..3157397 (-) 837 WP_405458013.1 hypothetical protein -
  OG786_RS13240 (OG786_13275) - 3157641..3158546 (+) 906 WP_275492807.1 A/G-specific adenine glycosylase -
  OG786_RS13245 (OG786_13280) - 3158670..3159374 (-) 705 WP_275492808.1 M23 family metallopeptidase -
  OG786_RS13250 (OG786_13285) - 3159851..3160210 (+) 360 WP_327268723.1 trypco2 family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49477.66 Da        Isoelectric Point: 8.7267

>NTDB_id=656522 OG786_RS13225 WP_275492804.1 3153830..3155242(+) (radA/sms) [Streptomyces sp. NBC_00101]
MAARTKTAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAAVPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAANAEHRTLYVTAEESASQVRMRADRIKAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPRDPGKVPAGMKVTEVADMGDALRVLPRRSRSEAPREDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=656522 OG786_RS13225 WP_275492804.1 3153830..3155242(+) (radA/sms) [Streptomyces sp. NBC_00101]
ATGGCTGCCCGTACGAAGACCGCGAAGGACCGGCCGTCCTACCGTTGCACCGAGTGCGGGTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACCGTCGAGGAGTTCGGCGGCGCGCCCGCCGTGCGCACCACCGCGGCCG
GCCGCGTCTCCACCGCGGCCGTGCCCATCGGTCAGGTGGACAGCCGGCAGGCGACCGCACGCTCGACCGGTGTCGGTGAG
CTGGACCGGGTCCTCGGCGGCGGGCTCGTCCCGGGCGCCGTGGTGCTGCTGGCCGGGGAGCCGGGGGTCGGGAAGTCGAC
CCTGCTGCTCGACGTGGCCGCGAAGGCCGCGAACGCGGAACACCGCACCCTCTACGTCACGGCGGAGGAGTCCGCGAGCC
AGGTCCGGATGCGCGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCGGCCGAGACCGACCTCTCGGCCGTC
CTCGGCCACCTCGACGCGGTCAAGCCCTCCCTGCTGGTGCTGGACTCGGTGCAGACGGTCGCGTCCCCGGAGATCGACGG
CGCGCCGGGCGGCATGGCGCAGGTCCGTGAGGTCGCCGGCGCGCTCATCCGCGCCTCCAAGGACCGCGGGATGGCGACGC
TGCTGGTGGGCCACGTCACCAAGGACGGCGCCATCGCCGGGCCCCGGCTGCTGGAGCACCTCGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGCGTCAAGAACCGTTACGGCGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGGATCACCGGTCTCGCCGATCCGTCCGGCCTCTTCCTGACCCGGCGCGACGAGCCGGTGC
CCGGCACCTGTCTGACCGTCACCCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTCACGGTCGACTCGCAG
ATCCCGTCGCCCCGCCGCACCACCTCCGGTCTGGAGACCTCGCGGGTCTCCATGATGCTGGCGGTGCTGGAGCAGCGGGG
CCGGATCAGCGCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGGGTGAAGCTCACCGAGCCCGCCGCGGACC
TGGCCATCGCGCTCGCGCTGGCGAGTGCGGCGAGCGACACCCCGCTCCCGAAGAACCTGGTCGCCATCGGTGAGGTGGGT
CTCGCCGGGGAGGTGCGGCGGGTCACCGGCGTGCAGCGCAGACTGGCCGAAGCGCACCGTCTGGGGTTCACGCACGCCTT
GGTTCCGCGCGATCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGCGATGCTCTCAGGGTGC
TGCCGCGCCGGTCTCGTTCGGAGGCACCACGGGAGGACGGCGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.383

0.421
  radA Streptococcus pneumoniae Rx1

42.163

96.383

0.406
  radA Streptococcus pneumoniae D39

42.163

96.383

0.406
  radA Streptococcus pneumoniae R6

42.163

96.383

0.406
  radA Streptococcus pneumoniae TIGR4

42.163

96.383

0.406
  radA Streptococcus mitis SK321

43.59

91.277

0.398
  radA Streptococcus mitis NCTC 12261

43.59

91.277

0.398