Detailed information NTG0656506

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: MIH18_RS08435
• Genome accession: NZ_CP092284
• Coordinates: 1823146..1824531 (+)
• Length: 461 a.a.
• NCBI ID: WP_249014302.1
• Uniprot ID: -
• Organism: Marinobacter sp. M3C
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1818146..1829531

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MIH18_RS08420 (MIH18_08415)	-	1818752..1819585 (+)	834	WP_249014300.1	outer membrane protein assembly factor BamD	-
MIH18_RS08425 (MIH18_08420)	-	1819639..1821303 (-)	1665	WP_249007686.1	NAD+ synthase	-
MIH18_RS08430 (MIH18_08425)	-	1821440..1823137 (+)	1698	WP_249014301.1	ATP-binding protein	-
MIH18_RS08435 (MIH18_08430)	pilR	1823146..1824531 (+)	1386	WP_249014302.1	sigma-54 dependent transcriptional regulator	Regulator
MIH18_RS08440 (MIH18_08435)	-	1824607..1825167 (+)	561	WP_249014303.1	GspH/FimT family pseudopilin	-
MIH18_RS23940	-	1825181..1825651 (-)	471	WP_283164860.1	type IV pilin protein	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50253.58 Da
• Isoelectric Point: 5.2266

>NTDB_id=656506 MIH18_RS08435 WP_249014302.1 1823146..1824531(+) (pilR) [Marinobacter sp. M3C]
MTKLTALIVDDEPDIRDLLEITLSRMGLNTVTAGTLAGGIAGMQKHTPNLCLTDMNLPDGKGIELVQWIQQHSPNTPVAV
ITAYGSMDIAIESLKAGAFDFVSKPVELPRLRELVNTALKLAQSPEPAPEDNSDPGLLLGNSAQIQTLRNQARKLARSQA
PVFIQGESGSGKELVARTIHQQGPRCDGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVDNKPGLFQSANGGTLFLDEIA
DLPLPMQVKLLRAIQEKAVRPVGDSHEVPVDIRVLSATHKDLPGLVQDGLFRQDLFYRINVIEIRVPPLRERSGDIALLA
RHILLRIAREYECTPIALTDAAVNYLKGYHFPGNVRELENILERAFTLCDGDVIDTGDLQLGSSCSDIDSAFLTPTTELV
ATADPQLSEQNLGLEGYLENIERKAIEQALEATRWNKTAAAKKLGISFRALRYKLKKLGLD

Nucleotide

• Length: 1386 bp

>NTDB_id=656506 MIH18_RS08435 WP_249014302.1 1823146..1824531(+) (pilR) [Marinobacter sp. M3C]
ATGACCAAACTGACCGCGCTGATCGTAGACGACGAACCCGACATCCGTGACCTACTAGAGATAACCCTCAGCCGCATGGG
CCTGAATACGGTCACCGCGGGCACTCTGGCAGGGGGGATCGCAGGCATGCAAAAGCACACGCCAAATTTGTGCCTGACCG
ACATGAACCTGCCAGATGGCAAAGGCATCGAGCTGGTGCAATGGATTCAACAGCATTCCCCCAATACGCCGGTCGCCGTT
ATAACAGCCTACGGCAGTATGGACATCGCCATTGAGTCCCTGAAGGCAGGTGCCTTTGATTTTGTGTCAAAGCCCGTCGA
ATTGCCGCGGCTGCGGGAGCTCGTTAACACCGCGCTCAAACTGGCCCAGAGCCCCGAGCCTGCGCCAGAAGACAATAGCG
ACCCGGGCTTGCTGCTGGGCAATTCCGCCCAGATTCAAACCTTACGCAATCAGGCCCGCAAACTGGCTCGCAGCCAAGCG
CCTGTCTTTATTCAAGGCGAATCCGGCAGCGGTAAAGAGCTGGTCGCGCGCACCATTCATCAGCAGGGCCCTAGATGTGA
TGGGCCGTTCATAGCCGTGAACTGTGGCGCTATTCCGTCTGAGTTAATGGAAAGTGAGTTTTTCGGCCACAAAAAAGGCA
GCTTCACCGGAGCGGTGGACAACAAGCCAGGCCTGTTTCAAAGCGCCAACGGCGGTACCCTGTTTCTGGATGAAATCGCC
GACTTACCATTGCCCATGCAGGTAAAGCTTCTGCGGGCCATTCAGGAAAAAGCCGTACGCCCGGTCGGTGACAGCCACGA
AGTGCCGGTCGATATCCGTGTGCTTAGTGCAACCCATAAAGATCTTCCGGGGCTGGTACAAGATGGCCTGTTCCGCCAGG
ACCTGTTCTATCGCATCAACGTGATTGAAATCCGCGTGCCGCCTCTGCGCGAACGCAGCGGCGACATAGCGCTGCTTGCC
AGGCACATTCTGCTGCGCATTGCCCGCGAATACGAGTGCACACCCATCGCCCTCACCGATGCCGCCGTTAACTATTTAAA
GGGCTACCATTTCCCGGGTAATGTGCGCGAGCTGGAAAACATACTGGAGCGGGCGTTTACACTTTGCGACGGAGACGTTA
TTGACACCGGCGACCTTCAACTTGGCAGCTCTTGTAGCGACATTGATTCGGCTTTTCTGACACCCACAACCGAGCTTGTG
GCAACGGCGGACCCCCAACTGTCAGAGCAGAACCTGGGCCTTGAGGGATATCTGGAGAACATAGAGCGCAAGGCTATTGA
GCAGGCGTTGGAAGCAACGCGCTGGAATAAAACGGCGGCGGCGAAAAAATTGGGGATCAGTTTTCGGGCGTTGCGGTATA
AGTTGAAGAAACTGGGACTGGATTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

• Bacterial regulatory protein, Fis family (HTH_8) (418-458)

• Response regulator receiver domain (Response_reg) (7-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.554	100	0.627
pilR	Acinetobacter baumannii strain A118	53.93	99.349	0.536