Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MD222_RS00040 Genome accession   NZ_CP092264
Coordinates   10070..10636 (+) Length   188 a.a.
NCBI ID   WP_011666823.1    Uniprot ID   M5ABA8
Organism   Levilactobacillus brevis strain YSJ3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5070..15636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MD222_RS00030 (MD222_00030) gyrA 6526..9060 (+) 2535 WP_011666821.1 DNA gyrase subunit A -
  MD222_RS00035 (MD222_00035) rpsF 9740..10036 (+) 297 WP_011666822.1 30S ribosomal protein S6 -
  MD222_RS00040 (MD222_00040) ssb 10070..10636 (+) 567 WP_011666823.1 single-stranded DNA-binding protein Machinery gene
  MD222_RS00045 (MD222_00045) rpsR 10665..10901 (+) 237 WP_011666824.1 30S ribosomal protein S18 -
  MD222_RS00050 (MD222_00050) - 11046..12233 (-) 1188 WP_087612603.1 metal-dependent hydrolase family protein -
  MD222_RS00055 (MD222_00055) - 12264..13871 (-) 1608 WP_087612604.1 peptide ABC transporter substrate-binding protein -
  MD222_RS00060 (MD222_00060) - 14383..14862 (+) 480 WP_225364923.1 hypothetical protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20513.13 Da        Isoelectric Point: 4.7381

>NTDB_id=656379 MD222_RS00040 WP_011666823.1 10070..10636(+) (ssb) [Levilactobacillus brevis strain YSJ3]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNQQGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFSFLEPRSRNENNGGGNYNGGSMNNNAPQNQNQNANPYTSGNPAPAAPSQGMAPNSGSNNQ
NSNANNNAADPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=656379 MD222_RS00040 WP_011666823.1 10070..10636(+) (ssb) [Levilactobacillus brevis strain YSJ3]
ATGATCAACCGAGTAGTACTTACTGGCCGACTAACACGGGATGTTGACTTACGCTACACCCAAGGCGGTGCTGCTGTAGC
CACCTTCACGCTGGCCGTTGATCGGCGGTTCACCAACCAACAAGGTGAACGAGAAGCTGATTTCGTAAGTTGCGTCATTT
GGCGCAAGTCCGCGGAAAACTTTGCCAACTTCTTCCACAAGGGTTCCCTTGTCGGTATTGAAGGGCGCATCCAGACCCGG
AATTACGAAAATCAACAGGGCCAACGGGTTTACGTCACCGAAGTGGTTGTCGAGAACTTTTCGTTCTTGGAACCCCGTTC
TCGTAACGAGAACAACGGTGGTGGAAACTACAATGGCGGCTCCATGAATAATAATGCTCCTCAAAATCAGAATCAAAATG
CCAATCCATACACGAGTGGGAATCCAGCTCCGGCTGCGCCTTCTCAAGGTATGGCCCCGAATTCTGGAAGTAACAATCAG
AACAGTAATGCGAACAACAATGCAGCTGATCCGTTTGCCAATTCTGGCGATTCCATTGACATTTCCGATGATGATTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5ABA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.702

100

0.617
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.574