Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG454_RS16250 Genome accession   NZ_CP108213
Coordinates   3429522..3430589 (-) Length   355 a.a.
NCBI ID   WP_383568551.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00105     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3424522..3435589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG454_RS16235 (OG454_16200) rcrP 3425177..3426910 (+) 1734 WP_405830027.1 ABC transporter ATP-binding protein Regulator
  OG454_RS16240 (OG454_16205) rcrQ 3426907..3428829 (+) 1923 WP_401601859.1 ABC transporter ATP-binding protein Regulator
  OG454_RS16245 (OG454_16210) - 3428947..3429468 (+) 522 WP_405830030.1 GNAT family N-acetyltransferase -
  OG454_RS16250 (OG454_16215) rpoS 3429522..3430589 (-) 1068 WP_383568551.1 RNA polymerase sigma factor Regulator
  OG454_RS16255 (OG454_16220) - 3430837..3431838 (+) 1002 WP_405830031.1 hypothetical protein -
  OG454_RS16260 (OG454_16225) - 3431835..3433919 (-) 2085 WP_405830033.1 molybdopterin oxidoreductase family protein -
  OG454_RS16265 (OG454_16230) - 3434046..3434816 (-) 771 WP_405830035.1 glucose 1-dehydrogenase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39833.52 Da        Isoelectric Point: 5.4081

>NTDB_id=656362 OG454_RS16250 WP_383568551.1 3429522..3430589(-) (rpoS) [Streptomyces sp. NBC_00105]
MEVAPVQTRTLTVNVSESSEAKAVDEEPEVLEPIDPVPAPRRRSNSDGGGGAGPSADLFRQYLREIGRIPLLTAAEEVDL
ARRVEAGLFAEEKLGNTPDLDSRLALDLDKLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVE
KFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTPERVMEV
LRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIG
RIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=656362 OG454_RS16250 WP_383568551.1 3429522..3430589(-) (rpoS) [Streptomyces sp. NBC_00105]
CTGGAGGTCGCCCCCGTGCAGACCCGGACCCTGACCGTGAACGTGAGCGAGTCCTCGGAGGCCAAGGCCGTGGACGAAGA
GCCCGAGGTACTGGAGCCGATCGATCCGGTGCCGGCGCCCCGCAGGCGGAGCAACAGCGACGGCGGGGGCGGAGCGGGGC
CCTCCGCCGATCTGTTCCGGCAGTACCTGCGCGAGATAGGCAGGATCCCCCTGCTGACCGCCGCCGAGGAGGTGGACCTC
GCGCGGCGCGTCGAAGCCGGGCTGTTCGCCGAGGAGAAGCTCGGCAACACCCCCGACCTCGACTCCCGGCTCGCCCTGGA
CCTCGACAAGCTCGTCGTCATGGGGCGGATGGCCAAACGCCGGCTCATCGAGTCGAACCTGCGGCTCGTCGTCTCCGTCG
CGAAGCGCTACGTGGGCCGCGGGCTCACCATGCTCGACCTCGTGCAGGAGGGGAACCTCGGGCTCATCCGGGCCGTCGAG
AAATTCGACTACGCCCGCGGGTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGGCAGGCGATGTCCCGGGCCCTCGC
CGACCAGGCCCGGACCATCCGCGTCCCCGTCCACGTCGTCGAGCTGATCAACCGCGTCGTGCGCGTCCAGCGCCGCATGC
TCCAGGAGCGCGGGTACGAGCCCACCGCCGAAGAGGTCGCCGTCCACCTGGAGTTGACCCCCGAGCGGGTCATGGAAGTG
CTCCGCCTCGCCCAGGAACCGGTCTCCCTGCACGCGCCGGTCGGCGAGGAGGACGACGTCGCCCTCGGTGACCTCATCGA
GGACGGGGACGCCGCCTCCCCCGTGGAATCGGCCGCGTTCTTCCTGCTGCGCGAGCACCTGGAAGCCGTCCTGTCGACCC
TCGGCGAACGCGAACGCAAGGTCGTCCAGCTCCGCTACGGGCTCGCCGACGGGCGGCCGCGGACCCTGGAGGAGATCGGC
CGGATCTTCGGCGTGACCCGCGAACGGATCCGCCAGATCGAGTCGAAGACCCTCAACAAGCTCCGCGACCACGCCTTCGC
CGATCAGCTCAGGGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(122-191)

Sigma-70, region 4 (Sigma70_r4)

(290-342)

Sigma-70 region 3 (Sigma70_r3)

(201-277)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.027

82.535

0.363