Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG454_RS16235 Genome accession   NZ_CP108213
Coordinates   3425177..3426910 (+) Length   577 a.a.
NCBI ID   WP_405830027.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00105     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3420177..3431910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG454_RS16205 (OG454_16170) - 3420891..3422507 (+) 1617 WP_405830024.1 MFS transporter -
  OG454_RS16225 (OG454_16190) - 3423179..3423478 (+) 300 WP_401601853.1 YtxH domain-containing protein -
  OG454_RS16230 (OG454_16195) - 3423577..3425058 (+) 1482 WP_405830025.1 FGGY family carbohydrate kinase -
  OG454_RS16235 (OG454_16200) rcrP 3425177..3426910 (+) 1734 WP_405830027.1 ABC transporter ATP-binding protein Regulator
  OG454_RS16240 (OG454_16205) rcrQ 3426907..3428829 (+) 1923 WP_401601859.1 ABC transporter ATP-binding protein Regulator
  OG454_RS16245 (OG454_16210) - 3428947..3429468 (+) 522 WP_405830030.1 GNAT family N-acetyltransferase -
  OG454_RS16250 (OG454_16215) rpoS 3429522..3430589 (-) 1068 WP_383568551.1 RNA polymerase sigma factor Regulator
  OG454_RS16255 (OG454_16220) - 3430837..3431838 (+) 1002 WP_405830031.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62508.47 Da        Isoelectric Point: 5.1555

>NTDB_id=656360 OG454_RS16235 WP_405830027.1 3425177..3426910(+) (rcrP) [Streptomyces sp. NBC_00105]
MLIRLLRTHLGAYRKPIAVLVLLQLLQTSASLYLPTLNADIIDQGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAAFGRDVRAAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVRLSGV
LLAVVPVLGISVGAIVYKTRPLFRQMQDRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFREANADLTGVSLASGKLLAY
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PTDPVRKLLRRGVLELRGADFGYPGAESPVLRGVSLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
RLDPDLLAKTVGMVPQKPYLFSGTIASNLRYGRPDASDEELWQALEVAQAKEFVSALEGGLEALVTQGGTNVSGGQRQRL
AIARTLVQRPEIFLFDDSFSALDYATDAALRAALSRETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=656360 OG454_RS16235 WP_405830027.1 3425177..3426910(+) (rcrP) [Streptomyces sp. NBC_00105]
GTGCTCATACGACTTCTGCGGACCCATCTGGGTGCGTACCGGAAACCCATCGCGGTGCTGGTCCTGCTGCAGCTGCTGCA
GACCAGCGCCAGCCTCTACCTGCCCACACTGAATGCCGACATCATCGACCAGGGTGTCGTCAACGGCGACACCGGCTACA
TCCTCCGCTTCGGCGCCCTGATGCTCGGCGTCTCCCTCGTGCAGCTCGTCTGCAACGTCGGAGCCGTCTACTACGGCGCC
CGTACGGCGGCGGCCTTCGGCCGGGACGTCCGCGCGGCCGTCTTCGACCGCGTACAGAGCTTCTCCGCACGGGAGCTCGG
CCAGTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACCTTCA
CCCTGATGGTCTCGGCCCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCGCTGGACGTGCGGCTGTCGGGCGTC
CTGCTCGCCGTGGTCCCGGTGCTCGGGATCTCGGTCGGCGCCATCGTCTACAAGACGCGGCCGCTGTTCCGCCAGATGCA
GGACCGCCTGGACACCGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGGGTGATCCGGGCCTTCGTCCGCGACG
ACTACGAGAAGGACCGTTTCCGCGAGGCCAACGCCGACCTGACCGGCGTCTCGCTGGCCTCCGGCAAGCTCCTGGCGTAC
ATGTTCCCCACGGTCATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGTGCGATGCGCGTCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATTGTCATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTGCCG
CCCACCGACCCGGTGCGCAAGCTGCTGCGCAGGGGCGTACTGGAGCTGCGCGGCGCGGACTTCGGCTACCCGGGCGCCGA
GTCCCCGGTGCTGCGCGGGGTGAGCCTGGTGGCCCGCCCCGGCGAGACCACGGCGGTGATCGGCTCCACCGGAAGCGGCA
AGTCCACGCTGCTGGGCCTGGTCCCGCGCCTGTTCGACGCGACCGGCGGCGAGGTGCTGGTCGACGGGGAGGACGTGCGC
CGGCTCGACCCGGACCTGCTGGCCAAGACGGTCGGCATGGTTCCGCAGAAGCCCTACCTGTTCTCCGGAACCATCGCGTC
CAACCTGCGCTACGGGCGCCCGGACGCGAGTGACGAAGAGCTGTGGCAGGCGCTGGAAGTGGCGCAGGCCAAGGAGTTCG
TGTCCGCGCTGGAGGGTGGCCTGGAGGCCCTCGTCACCCAGGGCGGAACCAATGTCTCCGGCGGCCAGCGCCAACGCCTG
GCCATCGCCCGCACCCTGGTGCAGCGTCCGGAGATCTTCCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCTCCCGCGAGACGGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGCCAGGTCGTGGGCGAGGGACGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.32

97.574

0.393