Detailed information NTG0656315

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHB59_RS29560
• Genome accession: NZ_CP108206
• Coordinates: 6570306..6571592 (+)
• Length: 428 a.a.
• NCBI ID: WP_266564255.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00110
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 6565306..6576592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHB59_RS29530 (OHB59_29455)	-	6566446..6566640 (+)	195	WP_100594330.1	hypothetical protein	-
OHB59_RS29545 (OHB59_29470)	tig	6567157..6568545 (+)	1389	WP_266670514.1	trigger factor	-
OHB59_RS29550 (OHB59_29475)	clpP	6568829..6569437 (+)	609	WP_116513663.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHB59_RS29555 (OHB59_29480)	clpP	6569491..6570150 (+)	660	WP_266670511.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHB59_RS29560 (OHB59_29485)	clpX	6570306..6571592 (+)	1287	WP_266564255.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHB59_RS29565 (OHB59_29490)	-	6571677..6572129 (-)	453	WP_266670508.1	hypothetical protein	-
OHB59_RS29570 (OHB59_29495)	-	6572307..6573254 (-)	948	WP_389563900.1	hypothetical protein	-
OHB59_RS29575 (OHB59_29500)	-	6573440..6576070 (+)	2631	WP_266670504.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46822.50 Da
• Isoelectric Point: 4.7856

>NTDB_id=656315 OHB59_RS29560 WP_266564255.1 6570306..6571592(+) (clpX) [Streptomyces sp. NBC_00110]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEA
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELSKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIHSKRELEEKDQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILLEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRRTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
AEAVHSNVNPTLIPRDARGSGSGEQKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=656315 OHB59_RS29560 WP_266564255.1 6570306..6571592(+) (clpX) [Streptomyces sp. NBC_00110]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAGCTCGCGGAGACGA
GCGAGGTCCGCTGGGAAGAACTTCCCAAGCCTCGCGAGATCTACGAGTTCCTCGAAGGCTATGTCGTCGGCCAGGAGGCC
GCGAAGAAAGCCCTCTCGGTCGCTGTGTACAACCATTACAAGCGGGTCCAGGCCGGTGAGAACGGCGGAGCCCAGGGACG
CGACGACGCGATCGAGCTGTCGAAGTCCAACATCCTGCTCCTGGGCCCCACGGGCTCGGGCAAGACACTCCTGGCCCAGA
CCCTGGCCCGCATGCTGAACGTTCCGTTCGCCATCGCCGACGCGACGGCGCTCACGGAGGCCGGCTATGTGGGCGAGGAC
GTCGAGAACATCCTCCTGAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGATGTGTCCGGTGAGGGCGTCCAGCAGGCTC
TGCTCAAGATCCTTGAGGGGACCACGGCTTCCGTCCCGCCCCAGGGCGGCCGCAAGCACCCCCATCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCGTTCGCCGGACTGGAGAAGATCATCGAGTCGCGGGCGGGTGC
CAAGGGCATCGGCTTCGGCGCGACGATCCACTCCAAGCGCGAGCTGGAGGAGAAGGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTCCCCGTCATCACCTCGGTCCACAACCTGGACCGC
GAGGCGCTCCTCCAGATTCTCCTGGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTGCGCCGCACCGGCGCGCGCGGCCTGC
GCGCGATCATGGAGGAAGTCCTCCAGTCCGTGATGTACGAGGTCCCCTCCCGCAAGGACGTGGCCCGCGTCGTCATCACG
GCAGAGGCCGTCCACTCGAACGTGAACCCGACGCTGATCCCCCGCGACGCCCGCGGCTCGGGCAGCGGAGAGCAGAAGTC
CGCCTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.433	93.925	0.596
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.745	96.028	0.526