Detailed information NTG0656297

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: MF271_RS11290
• Genome accession: NZ_CP092190
• Coordinates: 1719676..1722342 (+)
• Length: 888 a.a.
• NCBI ID: WP_239048886.1
• Uniprot ID: -
• Organism: Deinococcus sp. KNUC1210
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1714676..1727342

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MF271_RS11265 (MF271_11265)	-	1714895..1717060 (+)	2166	WP_239048882.1	helicase-associated domain-containing protein	-
MF271_RS11270 (MF271_11270)	-	1717060..1717248 (+)	189	WP_239048883.1	hypothetical protein	-
MF271_RS11275 (MF271_11275)	-	1717277..1718062 (-)	786	WP_239048884.1	enoyl-ACP reductase	-
MF271_RS11280 (MF271_11280)	pgeF	1718204..1718983 (+)	780	WP_239048885.1	peptidoglycan editing factor PgeF	-
MF271_RS11285 (MF271_11285)	-	1718980..1719618 (+)	639	WP_370657300.1	YqeG family HAD IIIA-type phosphatase	-
MF271_RS11290 (MF271_11290)	pilB	1719676..1722342 (+)	2667	WP_239048886.1	type II/IV secretion system protein	Machinery gene
MF271_RS11295 (MF271_11295)	pilT	1722458..1723651 (+)	1194	WP_239048887.1	type IV pilus twitching motility protein PilT	Machinery gene
MF271_RS11300 (MF271_11300)	-	1723755..1723976 (+)	222	WP_239048888.1	hypothetical protein	-
MF271_RS11305 (MF271_11305)	-	1724312..1725235 (+)	924	WP_239048889.1	GNAT family N-acetyltransferase	-
MF271_RS11310 (MF271_11310)	-	1725219..1725878 (-)	660	WP_239048890.1	DsbA family protein	-
MF271_RS11315 (MF271_11315)	-	1725933..1726594 (+)	662	Protein_1723	trimeric intracellular cation channel family protein	-
MF271_RS11320 (MF271_11320)	-	1726613..1727221 (-)	609	WP_239048891.1	TMEM175 family protein	-

Sequence

Protein

• Length: 888 a.a.
• Molecular weight: 97301.33 Da
• Isoelectric Point: 4.9221

>NTDB_id=656297 MF271_RS11290 WP_239048886.1 1719676..1722342(+) (pilB) [Deinococcus sp. KNUC1210]
MALSIGDRRLGAILLEQGYVNDTDLQRALDRHSEVGGRLADILIDGGMVGEKRIARAVEEALGIPLVNLTVLTPDPAALA
SVKSQVALAALAFPFALEGDTLRVAFVDPLNNLNLETVEDASGLNVELYQALREQVQWAIALHYPELGLNAQMPLESQDG
TVSLLGQRLVVRGVISDEQLQTALDQQGQSGEPLGSILLGLNMITEEQLYEMLAEQSGKVYVRNPRDFEPAEEVLGLLMR
ADALRLSAVPLEEKGNEVVLVGSDPRRQQDIEALLGRPVEMLLGRPADVEALIERCYPQRGRLGEQMVQQGSLSRSQLRE
ALQVQARSGKVKPLGEVIVDLGFAGSEEIDQALQKQTAGGGRLEDTLVQSGKLSPEMLARSLASQLGYEFLDPVQSPPDP
KVALLIPESTARRYTVVPMRLQGNALVVAMKDPRNVFALDDLRLISGRDIIPAVMAEKDIVRLIERYFGSADMVQLNERL
VQESRSRDRERESQVDTTDLDDNAVVRVVDNIIREAALQDASDIHIEPTEHHLRVRYRIDGTLRDHMELPKGSAQSVLAR
IKILGQLDIAERRIPQDGRLRFRKGSIDLDLRLSTLPTVYGEKAVMRLLQKAHNIPEVEQLGLSEHNFQRFSDLIEKPNG
IFLITGPTGSGKSFSSFSILKRIARPEKNTTTIEDPVEYEIPGINQSQVNPVAGLTFARALRAFLRQDPDIIFVGEIRDA
ETAKIATEAALTGHLVLATLHTNDAPGAVTRLEEMGVENFNIGASLIGVLGQRLVRKVCPDCKTPTNADPDVLRRLGLSE
KELRGATLFRGAGCPRCGGTGYKGRMGIHELMVIDEPLRRAIGKGEPASELREIATSQSSMKTLRQDGIEKAVLGITTLE
EVLAVTSA

Nucleotide

• Length: 2667 bp

>NTDB_id=656297 MF271_RS11290 WP_239048886.1 1719676..1722342(+) (pilB) [Deinococcus sp. KNUC1210]
ATGGCACTTTCTATCGGAGACCGGCGGCTGGGCGCGATTCTGCTCGAACAGGGCTATGTCAACGACACCGACCTGCAACG
GGCGCTCGACCGTCATTCGGAGGTCGGCGGGCGGCTGGCAGACATCCTGATCGACGGCGGCATGGTGGGCGAAAAACGCA
TCGCGCGGGCCGTCGAGGAAGCGCTGGGCATTCCGCTGGTCAATCTGACGGTGCTGACTCCCGATCCGGCAGCGCTGGCG
AGCGTCAAATCGCAGGTGGCGCTGGCGGCGCTGGCGTTTCCCTTCGCGCTGGAGGGCGACACGCTGCGGGTGGCCTTCGT
CGATCCGCTGAACAATCTAAATCTGGAAACCGTCGAGGATGCCAGCGGCCTGAACGTCGAGCTGTATCAGGCGCTGCGCG
AACAGGTGCAGTGGGCGATTGCGCTGCACTATCCCGAGCTGGGGCTGAATGCCCAGATGCCGCTGGAATCGCAGGACGGC
ACGGTATCGCTGCTGGGTCAGCGGCTGGTGGTGCGCGGCGTCATCAGTGACGAGCAGCTTCAGACGGCGCTCGATCAGCA
GGGGCAGAGCGGCGAGCCGCTGGGCAGCATCCTGCTGGGCCTGAACATGATCACCGAGGAGCAGCTGTACGAGATGCTGG
CCGAGCAGTCGGGCAAGGTCTACGTACGCAATCCACGCGACTTCGAGCCTGCCGAAGAGGTGCTGGGGCTGCTGATGCGC
GCCGATGCCCTGCGGCTGTCGGCGGTGCCGCTGGAAGAGAAGGGCAACGAGGTGGTGCTGGTGGGCAGCGATCCGCGCCG
GCAGCAGGATATCGAGGCGCTGCTGGGGCGACCGGTCGAGATGCTGCTGGGCCGCCCCGCCGACGTCGAGGCGCTGATCG
AGCGCTGTTACCCGCAGCGTGGACGACTGGGCGAACAGATGGTGCAGCAGGGCTCGCTGTCGCGCTCACAGCTGCGCGAG
GCGCTGCAGGTGCAGGCCCGCAGCGGCAAGGTCAAGCCGCTGGGCGAGGTGATCGTCGATCTGGGCTTCGCGGGCAGCGA
GGAAATCGATCAGGCGCTGCAGAAGCAGACGGCGGGCGGTGGCCGCCTGGAAGACACCCTGGTGCAGTCCGGCAAGCTCA
GCCCCGAGATGCTCGCCCGCTCCCTCGCCTCTCAGCTCGGTTACGAGTTCCTCGATCCCGTTCAGAGCCCCCCCGATCCA
AAGGTCGCCCTGCTGATTCCCGAATCGACGGCGCGGCGGTACACGGTGGTACCGATGCGCTTACAGGGGAACGCGCTGGT
GGTGGCGATGAAGGACCCGCGCAACGTGTTCGCGCTGGACGACCTGCGGCTGATCAGCGGGCGCGACATCATCCCGGCGG
TGATGGCCGAAAAGGACATCGTGCGGCTGATCGAGCGCTACTTCGGCTCGGCGGACATGGTCCAGCTCAACGAGCGCCTG
GTGCAGGAAAGCCGGAGCCGTGACCGCGAGCGCGAGTCGCAGGTGGACACCACCGATCTGGACGACAACGCAGTGGTGCG
GGTGGTGGACAACATCATCCGCGAGGCGGCCTTGCAGGACGCCTCGGACATCCACATCGAGCCGACCGAGCACCACCTGC
GGGTGCGCTACCGCATCGACGGCACGCTGCGCGACCACATGGAGCTGCCCAAAGGCTCGGCCCAGAGCGTGCTGGCCCGC
ATCAAGATCCTGGGGCAGCTGGACATCGCCGAGCGGCGCATTCCGCAGGACGGTCGGTTGCGGTTTCGCAAGGGCAGCAT
CGATCTGGATCTGCGCCTGAGTACCCTGCCGACGGTGTACGGGGAAAAGGCGGTGATGCGCCTGCTGCAAAAGGCGCATA
ACATCCCGGAAGTCGAGCAGCTGGGGCTATCGGAGCACAACTTCCAGCGCTTCAGCGATCTGATCGAGAAGCCTAACGGC
ATCTTCCTGATCACCGGGCCGACCGGCTCGGGCAAGTCGTTTTCCAGCTTCAGTATTCTCAAGCGCATCGCCCGGCCCGA
GAAGAACACCACCACCATCGAAGATCCGGTGGAATACGAGATTCCCGGCATCAATCAGTCGCAGGTCAACCCGGTGGCCG
GGTTGACGTTTGCCCGGGCGCTGCGGGCGTTTCTGCGCCAGGACCCCGACATCATCTTCGTGGGTGAGATCCGCGACGCC
GAAACCGCCAAGATCGCCACCGAAGCCGCGCTCACCGGGCACCTGGTGCTGGCTACCCTGCACACCAACGACGCCCCCGG
CGCCGTGACCCGACTGGAAGAGATGGGCGTGGAGAACTTCAACATCGGTGCGTCGCTGATCGGGGTGCTGGGACAGCGTC
TGGTCCGCAAGGTCTGTCCCGACTGCAAGACCCCCACCAACGCCGACCCGGATGTGTTGCGCCGCCTGGGGCTGAGCGAG
AAGGAGCTGCGCGGCGCGACGCTGTTCCGGGGCGCGGGGTGTCCGCGCTGCGGCGGCACCGGGTACAAGGGCCGCATGGG
CATTCACGAACTGATGGTGATCGATGAACCGCTGCGCCGGGCCATCGGCAAGGGGGAACCGGCCAGCGAACTGCGCGAGA
TCGCCACCTCGCAGAGCAGCATGAAGACCCTGCGCCAGGACGGGATCGAAAAGGCTGTCCTCGGCATCACCACCCTCGAA
GAAGTCCTCGCTGTCACCAGCGCGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (512-777)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (367-471)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (201-301)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (43-145)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	71.236	100	0.714
pilF	Thermus thermophilus HB27	56.278	100	0.565