Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB59_RS14830 Genome accession   NZ_CP108206
Coordinates   3300806..3301459 (-) Length   217 a.a.
NCBI ID   WP_384059910.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00110     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3295806..3306459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB59_RS14805 (OHB59_14750) - 3296019..3296882 (-) 864 WP_266674920.1 ABC transporter permease -
  OHB59_RS14810 (OHB59_14755) - 3296872..3297687 (-) 816 WP_266674919.1 ABC transporter ATP-binding protein -
  OHB59_RS14815 (OHB59_14760) - 3297848..3298540 (+) 693 WP_266674918.1 response regulator -
  OHB59_RS14820 (OHB59_14765) - 3298624..3300216 (-) 1593 WP_266674917.1 cation acetate symporter -
  OHB59_RS14825 (OHB59_14770) - 3300213..3300710 (-) 498 WP_266674916.1 DUF485 domain-containing protein -
  OHB59_RS14830 (OHB59_14775) vraR 3300806..3301459 (-) 654 WP_384059910.1 response regulator Regulator
  OHB59_RS14835 (OHB59_14780) - 3301615..3302769 (-) 1155 WP_329433783.1 histidine kinase -
  OHB59_RS14840 (OHB59_14785) - 3302766..3303290 (-) 525 WP_329433784.1 DUF1453 domain-containing protein -
  OHB59_RS14845 (OHB59_14790) - 3303474..3305609 (-) 2136 WP_266674913.1 type IIA DNA topoisomerase subunit B -
  OHB59_RS14850 (OHB59_14795) - 3306050..3306280 (+) 231 WP_018535956.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 22979.31 Da        Isoelectric Point: 4.8139

>NTDB_id=656270 OHB59_RS14830 WP_384059910.1 3300806..3301459(-) (vraR) [Streptomyces sp. NBC_00110]
MVADDQTVVREGIVMLLGLLPGIEVVGAAGDGDEAVALVARLAPDVVLMDLRMPRCDGVEATRRIRSEYPGTQVVILTTY
ADDESLFPALKAGARGYLTKDAGGDEIVRAVEDVLSGDAGLSPKIQRRLLERLSEPAPAPAPVDPPDGITAREAEVLGLI
AEGLTNQEIARALHVSTATVKTHINNLFAKTGLKDRAQAVRYAYRHGLVQPPGSAIT

Nucleotide


Download         Length: 654 bp        

>NTDB_id=656270 OHB59_RS14830 WP_384059910.1 3300806..3301459(-) (vraR) [Streptomyces sp. NBC_00110]
GTGGTCGCCGATGACCAGACGGTCGTGCGCGAGGGCATCGTGATGCTGCTCGGGCTGCTGCCGGGTATCGAGGTCGTCGG
AGCGGCCGGTGACGGGGACGAGGCCGTCGCGCTGGTCGCCCGACTTGCCCCGGACGTCGTCCTCATGGACCTGCGCATGC
CGCGCTGTGACGGGGTGGAGGCGACGCGGCGCATCCGCTCGGAGTACCCCGGGACCCAGGTGGTCATCCTGACCACCTAC
GCGGACGACGAGTCGCTGTTCCCCGCGCTCAAGGCCGGAGCCCGCGGCTATCTCACCAAGGACGCGGGCGGCGACGAGAT
CGTGCGGGCCGTCGAGGACGTGCTCTCCGGTGACGCGGGCCTCTCCCCGAAGATCCAGCGCCGTCTCCTGGAGCGTCTTT
CGGAGCCCGCACCGGCCCCCGCGCCGGTGGATCCGCCCGACGGGATCACCGCGCGAGAGGCCGAAGTTCTGGGACTCATC
GCCGAGGGGCTCACCAACCAGGAGATCGCCCGCGCCCTCCATGTCTCCACCGCGACGGTGAAGACACACATCAACAATCT
CTTCGCCAAGACCGGCCTCAAGGACAGGGCACAGGCGGTGCGGTACGCCTATCGGCACGGCCTTGTTCAGCCACCGGGGT
CGGCCATCACCTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.048

96.774

0.378
  degU Bacillus subtilis subsp. subtilis str. 168

37.104

100

0.378