Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MF598_RS04570 Genome accession   NZ_CP092185
Coordinates   897384..898028 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain K203     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 892384..903028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF598_RS04545 (MF598_04545) - 892800..893141 (-) 342 WP_025285192.1 hypothetical protein -
  MF598_RS04550 (MF598_04550) degQ 893607..893747 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  MF598_RS04555 (MF598_04555) - 893878..894807 (+) 930 WP_224223773.1 polyprenyl synthetase family protein -
  MF598_RS04560 (MF598_04560) comX 894804..894974 (+) 171 WP_045208751.1 competence pheromone ComX -
  MF598_RS04565 (MF598_04565) comP 894952..897303 (+) 2352 WP_275424139.1 histidine kinase Regulator
  MF598_RS04570 (MF598_04570) comA 897384..898028 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  MF598_RS04575 (MF598_04575) - 898050..898433 (+) 384 WP_007613430.1 hotdog fold thioesterase -
  MF598_RS04580 (MF598_04580) mnhG 898473..898847 (-) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  MF598_RS04585 (MF598_04585) - 898831..899115 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  MF598_RS04590 (MF598_04590) - 899115..899591 (-) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  MF598_RS04595 (MF598_04595) - 899597..901078 (-) 1482 WP_224223772.1 Na+/H+ antiporter subunit D -
  MF598_RS04600 (MF598_04600) - 901071..901412 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  MF598_RS04605 (MF598_04605) - 901412..901843 (-) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=656235 MF598_RS04570 WP_003152052.1 897384..898028(+) (comA) [Bacillus velezensis strain K203]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=656235 MF598_RS04570 WP_003152052.1 897384..898028(+) (comA) [Bacillus velezensis strain K203]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864