Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H7R28_RS06270 Genome accession   NZ_AP022069
Coordinates   1319129..1319866 (-) Length   245 a.a.
NCBI ID   WP_000197689.1    Uniprot ID   -
Organism   Escherichia coli strain WP4-W18-ESBL-09     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1314129..1324866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R28_RS06240 (WP4W18E09_12250) yfiL 1314287..1314652 (-) 366 WP_001314943.1 DUF2799 domain-containing protein -
  H7R28_RS06245 (WP4W18E09_12260) aroF 1314862..1315932 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  H7R28_RS06250 (WP4W18E09_12270) tyrA 1315943..1317064 (+) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  H7R28_RS06255 (WP4W18E09_12280) pheA 1317107..1318267 (-) 1161 WP_020233815.1 bifunctional chorismate mutase/prephenate dehydratase -
  H7R28_RS06260 pheL 1318366..1318413 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  H7R28_RS06265 (WP4W18E09_12290) raiA 1318517..1318858 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  H7R28_RS06270 (WP4W18E09_12300) comL 1319129..1319866 (-) 738 WP_000197689.1 outer membrane protein assembly factor BamD Machinery gene
  H7R28_RS06275 (WP4W18E09_12310) rluD 1320001..1320981 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7R28_RS06280 (WP4W18E09_12320) yfiH 1320978..1321709 (+) 732 WP_001520329.1 purine nucleoside phosphorylase YfiH -
  H7R28_RS06285 (WP4W18E09_12330) clpC 1321839..1324412 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.45 Da        Isoelectric Point: 7.9331

>NTDB_id=65623 H7R28_RS06270 WP_000197689.1 1319129..1319866(-) (comL) [Escherichia coli strain WP4-W18-ESBL-09]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAKYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=65623 H7R28_RS06270 WP_000197689.1 1319129..1319866(-) (comL) [Escherichia coli strain WP4-W18-ESBL-09]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCAAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment