Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHB07_RS17740 Genome accession   NZ_CP108203
Coordinates   3976655..3977254 (-) Length   199 a.a.
NCBI ID   WP_031090791.1    Uniprot ID   A0ABW0B8K0
Organism   Streptomyces sp. NBC_00111     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3971655..3982254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB07_RS17720 (OHB07_17700) - 3972310..3972885 (-) 576 WP_329230355.1 SigE family RNA polymerase sigma factor -
  OHB07_RS17725 (OHB07_17705) - 3973245..3974309 (-) 1065 WP_329230356.1 aspartate-semialdehyde dehydrogenase -
  OHB07_RS17730 (OHB07_17710) - 3974306..3975577 (-) 1272 WP_329230358.1 aspartate kinase -
  OHB07_RS17735 (OHB07_17715) - 3975912..3976571 (-) 660 WP_073750343.1 DUF5063 domain-containing protein -
  OHB07_RS17740 (OHB07_17720) recR 3976655..3977254 (-) 600 WP_031090791.1 recombination mediator RecR Machinery gene
  OHB07_RS17745 (OHB07_17725) - 3977316..3977651 (-) 336 WP_329238763.1 YbaB/EbfC family nucleoid-associated protein -
  OHB07_RS17750 (OHB07_17730) - 3978011..3978799 (+) 789 WP_403920681.1 SLATT domain-containing protein -
  OHB07_RS17755 (OHB07_17735) - 3978895..3979545 (-) 651 WP_329230363.1 hypothetical protein -
  OHB07_RS17760 (OHB07_17740) - 3979635..3980351 (-) 717 WP_406463228.1 GntR family transcriptional regulator -
  OHB07_RS17765 (OHB07_17745) - 3980442..3981815 (-) 1374 WP_329230368.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21943.27 Da        Isoelectric Point: 5.1777

>NTDB_id=656218 OHB07_RS17740 WP_031090791.1 3976655..3977254(-) (recR) [Streptomyces sp. NBC_00111]
MYEGVVQELIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCEICGNVAQQEQCGICRDARRDRTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=656218 OHB07_RS17740 WP_031090791.1 3976655..3977254(-) (recR) [Streptomyces sp. NBC_00111]
TTGTACGAAGGCGTGGTCCAGGAACTGATCGACGAGCTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTACGCCGTCTGGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GTTTCTGCGAGATCTGCGGCAACGTCGCCCAGCAGGAGCAGTGCGGCATCTGCCGGGACGCCCGCCGCGACCGCACGGTC
ATCTGTGTGGTCGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGCTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGGCCCGACGATCTGCGCATCAGGGAGCTGCTGGCCCGGCTCGCGGACGGCT
CCATCACGGAGCTGATCCTCGCGACGGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTCGCCCGGATGGTCAAG
CCGATGGGCCTGCGCGTCACCCGGCTGGCCAGCGGGCTTCCGGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGGCGGCTGCTCGATGTGTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457