Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OHA48_RS24770 Genome accession   NZ_CP108201
Coordinates   5318085..5319494 (-) Length   469 a.a.
NCBI ID   WP_266682915.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5313085..5324494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA48_RS24745 (OHA48_24795) - 5313247..5313909 (-) 663 WP_266798520.1 hypothetical protein -
  OHA48_RS24750 (OHA48_24800) - 5313897..5314436 (-) 540 WP_266519041.1 SigE family RNA polymerase sigma factor -
  OHA48_RS24755 (OHA48_24805) - 5314699..5315646 (-) 948 WP_266682913.1 A/G-specific adenine glycosylase -
  OHA48_RS24760 (OHA48_24810) - 5315813..5316634 (+) 822 WP_266682914.1 hypothetical protein -
  OHA48_RS24765 (OHA48_24815) disA 5316879..5318003 (-) 1125 WP_266519052.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA48_RS24770 (OHA48_24820) radA 5318085..5319494 (-) 1410 WP_266682915.1 DNA repair protein RadA Machinery gene
  OHA48_RS24775 (OHA48_24825) - 5319815..5321041 (+) 1227 WP_266801861.1 IS110 family transposase -
  OHA48_RS24780 (OHA48_24830) - 5321204..5322898 (+) 1695 WP_266798523.1 BACON domain-containing protein -
  OHA48_RS24785 (OHA48_24835) - 5323068..5323934 (-) 867 WP_266682917.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49815.02 Da        Isoelectric Point: 8.0014

>NTDB_id=656147 OHA48_RS24770 WP_266682915.1 5318085..5319494(-) (radA) [Streptomyces sp. NBC_00114]
MAARTKTTKDRPSYRCKECGWQTAKWLGRCPECQAWGTIEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRMRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRVSKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPGDPGKIPPGMKVLEVADIGDALRVLPRSRRREAPRDEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=656147 OHA48_RS24770 WP_266682915.1 5318085..5319494(-) (radA) [Streptomyces sp. NBC_00114]
ATGGCTGCCCGTACCAAGACCACCAAGGACCGTCCGTCCTACCGCTGCAAGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGATCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGACTCCGGGCC
GCGTCACCACGTCCGCGGTGCCCATCGGCCAGGTCGACGGCCGCCAGGCCACCGCCCGCTCGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTCGTACCCGGCGCGGTGGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCGACGCT
GCTGCTGGATGTCGCGGCCAAGTCGGCGAGCGACGAGCACCGCACGCTGTACGTCACGGGTGAGGAGTCGGCGAGCCAGG
TGCGGATGCGCGCCGACCGCATCAAGGCCATCGACGACCATCTGTATCTCGCCGCCGAGACCGATCTGGCCGCAGTGCTC
GGGCACTTGGACGCGGTGAAGCCGTCGCTTCTCATCCTCGACTCCGTGCAGACCGTCGCCTCCCCGGAGATCGACGGCGC
CCCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCCGGCGCACTCATCCGCGTCTCCAAGGAGCGCGGCATGTCGACACTCC
TTGTGGGCCATGTCACCAAGGACGGGGCGATCGCGGGCCCGCGCCTTCTGGAGCACCTCGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTGCGTCTCGTACGGGGCGTCAAGAACCGCTACGGCGCCACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGCCTTGCCGACCCAAGCGGACTTTTCCTGACCAGGCGTGACGAACCGGTCCCCG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCCCTTGTCGCCGAAGTCCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCACGGCGTACGACGTCCGGTCTGGAGACCTCTCGCGTCTCGATGATGCTCGCGGTGCTGGAGCAGCGCGGCAA
GATCAGTGCGCTCGGCAAGCGGGACATCTACTCCGCGACGGTAGGCGGAGTGAAGCTCTCCGAGCCCGCCGCCGACCTCG
CCGTCGCCCTCGCGCTGGCGTCGGCCGCGAGCGACACCCCGCTGCCCAAGAACCTGGTCGCGATCGGTGAAGTCGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCCGGCTCAGCGAAGCGCACCGTCTCGGCTTCACTCATGCGCTCGT
TCCGGGCGACCCCGGCAAGATCCCTCCGGGCATGAAGGTCCTGGAAGTAGCCGACATAGGGGACGCTCTGAGGGTCCTTC
CGCGCTCCCGTCGCCGAGAGGCCCCACGGGACGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.207

95.736

0.414
  radA Streptococcus mitis NCTC 12261

43.207

95.736

0.414
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.257

96.375

0.407