Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MGG13_RS10675 Genome accession   NZ_CP092179
Coordinates   2013717..2015081 (-) Length   454 a.a.
NCBI ID   WP_239034848.1    Uniprot ID   -
Organism   Macrococcus brunensis strain 18KM571     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2008717..2020081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGG13_RS10650 (MGG13_10650) cysE 2009159..2009800 (-) 642 WP_133431829.1 serine O-acetyltransferase -
  MGG13_RS10655 (MGG13_10655) gltX 2010027..2011481 (-) 1455 WP_239034846.1 glutamate--tRNA ligase -
  MGG13_RS10660 (MGG13_10660) ispF 2011497..2011976 (-) 480 WP_239034847.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MGG13_RS10665 (MGG13_10665) ispD 2011964..2012650 (-) 687 WP_338041182.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MGG13_RS10670 (MGG13_10670) - 2012650..2013702 (-) 1053 WP_133431825.1 PIN/TRAM domain-containing protein -
  MGG13_RS10675 (MGG13_10675) radA 2013717..2015081 (-) 1365 WP_239034848.1 DNA repair protein RadA Machinery gene
  MGG13_RS10680 (MGG13_10680) - 2015176..2017614 (-) 2439 WP_239035721.1 ATP-dependent Clp protease ATP-binding subunit -
  MGG13_RS10685 (MGG13_10685) - 2017626..2018630 (-) 1005 WP_239034849.1 protein arginine kinase -
  MGG13_RS10690 (MGG13_10690) - 2018620..2019000 (-) 381 WP_239034850.1 UvrB/UvrC motif-containing protein -
  MGG13_RS10695 (MGG13_10695) - 2019012..2019470 (-) 459 WP_239034851.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50023.64 Da        Isoelectric Point: 7.4115

>NTDB_id=656146 MGG13_RS10675 WP_239034848.1 2013717..2015081(-) (radA) [Macrococcus brunensis strain 18KM571]
MAKTKVTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKAKGPKTAITDTSANQKVEKLKDVTKETTPRSTTYIKEFDR
VLGGGIVPGSLILIGGDPGIGKSTLLLQVCALLSQHDNVLYISGEESVRQTKLRADRLSEDAGELSVYAETNLQIIHETV
KKIEPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELLRMAKSMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
THHSYRILRAVKNRFGSTNEMGIFEMRQAGLKEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQALVTPTSFHNP
RRTSTGIDQNRLSLLMAVLEKKQGLLLQQQDAYIKVAGGVKLDEPAVDLSVVISIASSFSDKATRGDDCYIGEVGLTGEV
RRVARIEQRVQEAAKLGFKRVIIPKNNIGGWDFPPNIEILGITNIAEAIRIAFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=656146 MGG13_RS10675 WP_239034848.1 2013717..2015081(-) (radA) [Macrococcus brunensis strain 18KM571]
TTGGCAAAAACAAAAGTAACATTTGAATGTATGGCTTGTGGCTATCAGTCACCCAAATGGATGGGTAAGTGTCCGAACTG
TGGTGCCTGGAATCAGATGGAAGAAGTCATTGAACATAAAGCCAAAGGGCCGAAGACGGCTATTACAGACACTTCTGCTA
ATCAGAAAGTAGAAAAGCTGAAAGATGTCACAAAAGAAACAACACCAAGATCGACGACCTATATTAAAGAATTTGACCGT
GTTCTGGGTGGGGGAATCGTTCCTGGTTCACTGATTTTAATCGGTGGGGACCCGGGTATCGGTAAATCAACGCTCCTGCT
GCAAGTCTGTGCGCTACTATCACAGCATGACAACGTGCTCTATATTTCTGGGGAGGAATCTGTCCGCCAGACCAAACTGC
GTGCTGACCGACTTAGTGAAGACGCAGGAGAACTCAGTGTCTATGCTGAGACGAATCTGCAGATTATTCATGAGACAGTC
AAGAAAATTGAGCCGAAATTTCTGGTTATCGACTCTATCCAGACGATATTCCATCCAGAAGTCACTTCAGCACCGGGTTC
TGTATCGCAAGTCCGTGAATGTACACAGGAGCTGCTTCGCATGGCTAAGTCCATGAACATCGCGACATTCATTGTCGGTC
ACGTGACGAAAGAAGGTCAGATTGCCGGACCGCGTCTACTCGAACATATGGTGGATACCGTTCTTTATTTCGAAGGCGAT
ACACATCATAGTTACCGCATACTGCGCGCTGTAAAAAACAGGTTCGGTTCAACGAATGAAATGGGTATATTCGAGATGCG
TCAAGCCGGTCTGAAAGAAGTACTTAACCCGTCTGAAATGTTCCTGGAAGAACGGACAAAAAATGTGGCCGGTTCTACTA
TTGTCGCGACGATGGAAGGCACAAGACCTCTACTTGTAGAAGTACAGGCACTTGTGACACCGACGTCATTCCATAATCCG
CGCCGTACATCTACAGGCATCGATCAGAACCGTCTCAGTCTATTAATGGCTGTCCTGGAGAAGAAGCAGGGACTCCTGCT
GCAGCAACAGGATGCCTATATTAAAGTGGCAGGCGGGGTCAAACTGGATGAGCCGGCTGTCGATTTAAGCGTGGTCATCA
GTATTGCTTCCAGCTTCAGCGACAAAGCAACGCGCGGCGATGACTGCTATATCGGTGAAGTAGGGCTGACAGGAGAAGTG
AGACGGGTTGCACGTATAGAGCAACGTGTCCAGGAGGCAGCTAAACTTGGTTTTAAACGTGTGATTATCCCCAAAAATAA
TATCGGTGGCTGGGATTTTCCGCCAAACATCGAAATTTTGGGTATTACTAATATTGCGGAAGCAATTAGAATTGCTTTTA
ACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(356-427)

AAA domain (AAA_25)

(81-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.177

100

0.676
  radA Streptococcus pneumoniae Rx1

61.589

99.78

0.615
  radA Streptococcus pneumoniae D39

61.589

99.78

0.615
  radA Streptococcus pneumoniae R6

61.589

99.78

0.615
  radA Streptococcus pneumoniae TIGR4

61.589

99.78

0.615
  radA Streptococcus mitis NCTC 12261

61.589

99.78

0.615
  radA Streptococcus mitis SK321

61.589

99.78

0.615