Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHA48_RS23530 Genome accession   NZ_CP108201
Coordinates   5029669..5030268 (+) Length   199 a.a.
NCBI ID   WP_266682720.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5024669..5035268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA48_RS23505 (OHA48_23565) - 5025123..5025725 (+) 603 WP_266798240.1 type 1 glutamine amidotransferase family protein -
  OHA48_RS23510 (OHA48_23570) - 5025722..5026180 (+) 459 WP_266682716.1 MarR family winged helix-turn-helix transcriptional regulator -
  OHA48_RS23515 (OHA48_23575) - 5026266..5028158 (+) 1893 WP_266798242.1 protein kinase domain-containing protein -
  OHA48_RS23520 (OHA48_23580) - 5028229..5028978 (-) 750 WP_266682718.1 SLATT domain-containing protein -
  OHA48_RS23525 (OHA48_23585) - 5029247..5029609 (+) 363 WP_266682719.1 YbaB/EbfC family nucleoid-associated protein -
  OHA48_RS23530 (OHA48_23590) recR 5029669..5030268 (+) 600 WP_266682720.1 recombination mediator RecR Machinery gene
  OHA48_RS23535 (OHA48_23595) - 5030261..5030923 (+) 663 WP_266682721.1 DUF5063 domain-containing protein -
  OHA48_RS23540 (OHA48_23600) - 5031329..5031832 (+) 504 WP_266682722.1 SgcJ/EcaC family oxidoreductase -
  OHA48_RS23545 (OHA48_23605) - 5031836..5033191 (-) 1356 WP_266682723.1 HAMP domain-containing sensor histidine kinase -
  OHA48_RS23550 (OHA48_23610) - 5033188..5033886 (-) 699 WP_266682724.1 response regulator transcription factor -
  OHA48_RS23555 (OHA48_23615) - 5034002..5035207 (-) 1206 WP_323178105.1 cytochrome P450 -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21826.21 Da        Isoelectric Point: 4.9909

>NTDB_id=656141 OHA48_RS23530 WP_266682720.1 5029669..5030268(+) (recR) [Streptomyces sp. NBC_00114]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNIAQEELCNICRDTRRDVSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=656141 OHA48_RS23530 WP_266682720.1 5029669..5030268(+) (recR) [Streptomyces sp. NBC_00114]
TTGTACGAAGGCGTGGTGCAGGACCTGATCGACGAACTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCCCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAACCGACGGACGTACGGCGCCTCGCGCAGGCCCTCATGGAGGTCAAGGCGAAGGTCC
GCTTCTGTGCGACCTGCGGCAACATCGCGCAGGAAGAGCTGTGCAACATCTGCCGCGACACCCGCCGCGACGTCTCCGTC
ATCTGTGTGGTGGAGGAGCCCAAGGACGTGGTCGCCATCGAGCGCACACGTGAGTTCCGTGGCCGCTACCACGTCCTGGG
CGGAGCGATCAGCCCCATCGAGGGTGTGGGACCCGACGACCTGCGTATACGAGAACTTCTCGCACGGTTGGCCGACGGGA
CGGTCACGGAACTGATCCTGGCCACGGACCCGAACCTGGAGGGCGAGGCCACAGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452