Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MGG12_RS06955 Genome accession   NZ_CP092172
Coordinates   1324707..1325021 (-) Length   104 a.a.
NCBI ID   WP_420827917.1    Uniprot ID   -
Organism   Macrococcus brunensis strain 18KM1742     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1319707..1330021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGG12_RS06925 (MGG12_06925) gcvPA 1320507..1321850 (-) 1344 WP_239034393.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MGG12_RS06930 (MGG12_06930) gcvT 1321862..1322944 (-) 1083 WP_239034394.1 glycine cleavage system aminomethyltransferase GcvT -
  MGG12_RS06935 (MGG12_06935) - 1323017..1323514 (-) 498 WP_239034395.1 shikimate kinase -
  MGG12_RS06940 (MGG12_06940) - 1323669..1324055 (-) 387 WP_239048071.1 ComGF family competence protein -
  MGG12_RS06945 (MGG12_06945) - 1324075..1324308 (-) 234 WP_239034396.1 hypothetical protein -
  MGG12_RS06950 (MGG12_06950) - 1324295..1324756 (-) 462 WP_239034397.1 hypothetical protein -
  MGG12_RS06955 (MGG12_06955) comGC 1324707..1325021 (-) 315 WP_420827917.1 competence type IV pilus major pilin ComGC Machinery gene
  MGG12_RS06960 (MGG12_06960) comGB 1325065..1326099 (-) 1035 WP_239034398.1 competence type IV pilus assembly protein ComGB -
  MGG12_RS06965 (MGG12_06965) comGA 1326086..1327060 (-) 975 WP_239034399.1 competence type IV pilus ATPase ComGA -
  MGG12_RS06970 (MGG12_06970) - 1327261..1327509 (+) 249 WP_133432009.1 DUF2626 domain-containing protein -
  MGG12_RS06975 (MGG12_06975) - 1327541..1328158 (-) 618 WP_239034400.1 MBL fold metallo-hydrolase -
  MGG12_RS06980 (MGG12_06980) - 1328252..1328491 (+) 240 WP_133432011.1 DUF2759 domain-containing protein -
  MGG12_RS06985 (MGG12_06985) - 1328519..1328830 (-) 312 WP_239046938.1 MTH1187 family thiamine-binding protein -
  MGG12_RS06990 (MGG12_06990) - 1328841..1329800 (-) 960 WP_239046939.1 ROK family glucokinase -
  MGG12_RS06995 (MGG12_06995) - 1329797..1329988 (-) 192 WP_133432014.1 YqgQ family protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11383.27 Da        Isoelectric Point: 6.2142

>NTDB_id=656105 MGG12_RS06955 WP_420827917.1 1324707..1325021(-) (comGC) [Macrococcus brunensis strain 18KM1742]
MVKQSFRTDEGFTLIEMLLVLLVISVLIIVIIPNIAKQSDNVQSTGCTAQVKMVQGQMEAYKLQTGKTPTNVQDLVPDFL
KENQTQCKNGKTINIVNGEAVATS

Nucleotide


Download         Length: 315 bp        

>NTDB_id=656105 MGG12_RS06955 WP_420827917.1 1324707..1325021(-) (comGC) [Macrococcus brunensis strain 18KM1742]
ATGGTCAAGCAGAGTTTTCGTACAGATGAGGGTTTTACGCTCATAGAAATGCTTTTGGTTTTATTAGTTATTTCAGTTCT
TATCATCGTTATTATCCCTAACATCGCTAAACAGTCTGATAATGTTCAGTCAACTGGATGTACCGCTCAGGTCAAAATGG
TTCAAGGCCAGATGGAAGCTTACAAACTGCAGACAGGGAAAACACCGACTAATGTTCAAGATTTAGTGCCCGATTTTCTG
AAGGAAAATCAGACACAGTGTAAGAATGGCAAGACCATCAATATCGTTAACGGTGAAGCGGTTGCGACCTCTTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

60.204

94.231

0.567
  comGC Staphylococcus aureus N315

60.204

94.231

0.567
  comGC Bacillus subtilis subsp. subtilis str. 168

41.304

88.462

0.365