Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHU25_RS27275 Genome accession   NZ_CP108199
Coordinates   5840056..5840655 (+) Length   199 a.a.
NCBI ID   WP_100596382.1    Uniprot ID   A0ABV4SGR8
Organism   Streptomyces sp. NBC_00117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5835056..5845655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU25_RS27255 (OHU25_27220) - 5835308..5837797 (+) 2490 WP_327578184.1 dolichyl-phosphate beta-glucosyltransferase -
  OHU25_RS27260 (OHU25_27225) - 5837866..5838516 (+) 651 WP_326711940.1 hypothetical protein -
  OHU25_RS27265 (OHU25_27230) - 5838593..5839354 (-) 762 WP_326711939.1 SLATT domain-containing protein -
  OHU25_RS27270 (OHU25_27235) - 5839624..5839965 (+) 342 WP_116511762.1 YbaB/EbfC family nucleoid-associated protein -
  OHU25_RS27275 (OHU25_27240) recR 5840056..5840655 (+) 600 WP_100596382.1 recombination mediator RecR Machinery gene
  OHU25_RS27280 (OHU25_27245) - 5840648..5841307 (+) 660 WP_326711938.1 DUF5063 domain-containing protein -
  OHU25_RS27285 (OHU25_27250) - 5841555..5842835 (+) 1281 WP_116511757.1 aspartate kinase -
  OHU25_RS27290 (OHU25_27255) - 5842835..5843902 (+) 1068 WP_326711937.1 aspartate-semialdehyde dehydrogenase -
  OHU25_RS27295 (OHU25_27260) - 5844330..5844926 (+) 597 WP_266561913.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21794.21 Da        Isoelectric Point: 4.9909

>NTDB_id=656056 OHU25_RS27275 WP_100596382.1 5840056..5840655(+) (recR) [Streptomyces sp. NBC_00117]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCNICRDPRRDLTV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=656056 OHU25_RS27275 WP_100596382.1 5840056..5840655(+) (recR) [Streptomyces sp. NBC_00117]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTCGGCAGGCTGCCGGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTACGGCGTCTCGCGCAGGCACTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAATGTGGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTGACGGTG
ATCTGCGTCGTCGAGGAGCCCAAGGACGTCGTCGCGGTCGAGCGGACCCGCGAGTTCCGGGGCAAGTACCACGTGCTCGG
CGGGGCGATCAGTCCCATCGAGGGCGTCGGCCCGGACGACCTGCGGATAAGGGAACTCCTCGCCCGCCTCGCCGACGGCA
CGGTCACCGAGCTGATCCTGGCCACGGACCCGAACCTGGAGGGCGAGGCCACGGCGACGTACCTCGCCCGCATGATCAAG
CCGATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGGCTCCCGGTCGGGGGCGACCTGGAATACGCGGACGAGGTCACGCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462