Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OXB_RS13745 Genome accession   NZ_AP013294
Coordinates   2802061..2803758 (-) Length   565 a.a.
NCBI ID   WP_041075061.1    Uniprot ID   A0A0A8JL82
Organism   Bacillus sp. OxB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2797061..2808758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXB_RS13720 (OXB_2735) - 2797292..2797528 (+) 237 WP_041075055.1 DUF2627 domain-containing protein -
  OXB_RS13725 (OXB_2736) - 2797553..2798272 (-) 720 WP_041075056.1 glycerophosphodiester phosphodiesterase family protein -
  OXB_RS13730 (OXB_2737) - 2798265..2799824 (-) 1560 WP_041075058.1 FapA family protein -
  OXB_RS13735 (OXB_2738) spo0A 2799945..2800733 (-) 789 WP_041076832.1 sporulation transcription factor Spo0A Regulator
  OXB_RS13740 (OXB_2739) - 2800986..2801954 (-) 969 WP_041075059.1 SpoIVB peptidase S55 domain-containing protein -
  OXB_RS13745 (OXB_2740) recN 2802061..2803758 (-) 1698 WP_041075061.1 DNA repair protein RecN Machinery gene
  OXB_RS13750 (OXB_2741) argR 2803796..2804245 (-) 450 WP_041075062.1 transcriptional regulator ArgR -
  OXB_RS13755 (OXB_2742) - 2804339..2805157 (-) 819 WP_041075063.1 TlyA family RNA methyltransferase -
  OXB_RS13760 (OXB_2743) dxs 2805154..2807058 (-) 1905 WP_041076833.1 1-deoxy-D-xylulose-5-phosphate synthase -
  OXB_RS13765 (OXB_2744) - 2807153..2808037 (-) 885 WP_041075064.1 farnesyl diphosphate synthase -
  OXB_RS13770 (OXB_2745) - 2808030..2808272 (-) 243 WP_041075066.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63901.63 Da        Isoelectric Point: 4.9583

>NTDB_id=65599 OXB_RS13745 WP_041075061.1 2802061..2803758(-) (recN) [Bacillus sp. OxB-1]
MLSELSIQNFAIIEKLEVTFQDGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGAKKAELEGLFTIDDPGHPVLTK
MKEIGIETEDGVVILRRDLNANGKTVCRVNGKMVTIANLREIGSQLIDIHGQHENQELMLEKRHIHLLDHFAGNRLIRTY
EDYTELYERYRKLKHKLEMADENEQQVAQRIDLYSFQLKEIDAASLVIGEEEELEEEKRKLQNFNRLFERLNTAYESISG
DTHALDWLGSAMSDLEDAASVDKNLQSHAEVVASSFYSLQDTAHELKNILDDMEFDPNRLEAVEDRLALLTSLKRKYGKT
IEDIVLYREQIAEELDNLVSRDERMAEGQEKLRQLAQDLEVEAEELSIIRQDSAGSLEQAVMEQLKQLHMEKAVFQVEIK
RRPVGHFDRTGIDDVQFLISTNVGEPLKPLAKVASGGELSRLMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
ATIAIHSQVLCISHLPQVAAMADHHYLIKKEVRDERTSTAIHDIDRSQRIEEVSRMLSGTEITPLTLQHADELLKMAIER
KKTFR

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=65599 OXB_RS13745 WP_041075061.1 2802061..2803758(-) (recN) [Bacillus sp. OxB-1]
TTGTTAAGTGAACTATCCATTCAAAACTTTGCTATTATTGAAAAGTTGGAAGTTACATTTCAAGATGGTTTAACCGTGTT
GACAGGAGAGACAGGTGCCGGTAAATCCATCATCATTGACGCGGTCCAATTGTTAGCGGGCGGGCGTGGATCCCAGGAAT
TCATCCGCCACGGCGCCAAAAAGGCTGAACTGGAAGGGCTGTTCACAATCGACGATCCCGGCCATCCGGTCCTTACGAAA
ATGAAGGAAATCGGCATCGAAACGGAAGATGGCGTTGTCATTTTACGCCGGGATTTGAATGCAAACGGGAAAACGGTTTG
CCGCGTTAACGGTAAAATGGTGACAATTGCTAATTTAAGAGAGATCGGTTCCCAGCTCATCGATATCCATGGCCAACATG
AAAACCAGGAACTGATGCTTGAAAAAAGACATATCCATCTGCTTGATCATTTTGCGGGAAATCGACTTATCCGTACATAC
GAAGATTATACTGAACTTTATGAGCGATATCGAAAGTTGAAACATAAGCTGGAGATGGCCGATGAAAATGAGCAGCAAGT
AGCCCAACGAATTGATCTGTATTCTTTCCAGTTGAAAGAAATCGATGCCGCTTCCCTCGTCATCGGGGAAGAGGAGGAAC
TGGAAGAGGAAAAGCGGAAGCTGCAAAATTTCAATCGTCTCTTTGAGCGGTTGAATACGGCTTACGAATCGATCAGCGGG
GATACGCATGCTTTGGATTGGCTTGGATCCGCTATGAGCGACTTAGAGGATGCGGCATCTGTCGATAAGAACTTGCAATC
CCATGCAGAAGTAGTTGCATCCAGCTTTTATTCCTTGCAAGATACTGCACACGAATTGAAAAACATATTGGATGACATGG
AGTTTGATCCGAATCGTCTGGAAGCTGTTGAAGATCGACTCGCCTTGCTCACTTCATTGAAACGCAAATATGGAAAAACG
ATTGAGGATATCGTTCTGTATCGGGAGCAGATTGCGGAAGAACTCGATAATTTGGTAAGCCGGGATGAACGGATGGCGGA
AGGACAGGAGAAACTGAGACAATTGGCTCAGGACCTGGAAGTGGAAGCGGAAGAATTGTCCATCATTCGACAAGACTCAG
CCGGTTCATTGGAGCAAGCGGTAATGGAACAGTTGAAACAGCTCCATATGGAAAAAGCGGTATTTCAAGTGGAAATCAAG
AGGAGACCTGTCGGACATTTCGATCGAACCGGAATAGATGACGTACAATTCCTCATATCCACGAATGTGGGTGAACCGTT
GAAACCATTGGCGAAAGTCGCTTCGGGGGGAGAACTCTCACGGCTCATGCTCGCTTTGAAAACGATTTTTTCAAAACACC
AAGGGATCACTTCCATCATTTTTGACGAGGTGGATACGGGAGTCAGTGGAAGGGTTGCCCAAGCGATTGCGGAAAAGATT
GCGACGATTGCAATCCATTCCCAAGTGCTCTGCATTTCGCATTTGCCGCAAGTCGCCGCGATGGCGGACCATCATTATTT
GATCAAAAAAGAAGTGAGGGATGAGCGTACAAGCACCGCAATCCATGATATTGACCGCTCACAAAGGATTGAAGAGGTCT
CGCGCATGCTATCCGGCACAGAGATCACCCCACTTACCTTACAACATGCAGATGAATTGTTGAAAATGGCAATAGAAAGA
AAAAAAACCTTCCGATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8JL82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.166

100

0.533

Multiple sequence alignment