Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0A   Type   Regulator
Locus tag   OXB_RS13735 Genome accession   NZ_AP013294
Coordinates   2799945..2800733 (-) Length   262 a.a.
NCBI ID   WP_041076832.1    Uniprot ID   -
Organism   Bacillus sp. OxB-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context


Location: 2794945..2805733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXB_RS13720 (OXB_2735) - 2797292..2797528 (+) 237 WP_041075055.1 DUF2627 domain-containing protein -
  OXB_RS13725 (OXB_2736) - 2797553..2798272 (-) 720 WP_041075056.1 glycerophosphodiester phosphodiesterase family protein -
  OXB_RS13730 (OXB_2737) - 2798265..2799824 (-) 1560 WP_041075058.1 FapA family protein -
  OXB_RS13735 (OXB_2738) spo0A 2799945..2800733 (-) 789 WP_041076832.1 sporulation transcription factor Spo0A Regulator
  OXB_RS13740 (OXB_2739) - 2800986..2801954 (-) 969 WP_041075059.1 SpoIVB peptidase S55 domain-containing protein -
  OXB_RS13745 (OXB_2740) recN 2802061..2803758 (-) 1698 WP_041075061.1 DNA repair protein RecN Machinery gene
  OXB_RS13750 (OXB_2741) argR 2803796..2804245 (-) 450 WP_041075062.1 transcriptional regulator ArgR -
  OXB_RS13755 (OXB_2742) - 2804339..2805157 (-) 819 WP_041075063.1 TlyA family RNA methyltransferase -

Sequence


Protein


Download         Length: 262 a.a.        Molecular weight: 29318.08 Da        Isoelectric Point: 6.2314

>NTDB_id=65598 OXB_RS13735 WP_041076832.1 2799945..2800733(-) (spo0A) [Bacillus sp. OxB-1]
MEKVRIAIADDNKELVKTMVAYFEKHPEIEILWMAHNGNECLTKMEENVPDVLLLDIIMPHLDGIAVLETLNGRGTMPNV
IMLTAFGQEDVMTHAATLGASYFMLKPFEFDRLVQQIFKVAGTAKPAPPLMQNSGIVESDGAVSQKMLDTTITSIIKEIG
VPAHIKGYAFLREAIQKVYTDADLLGSVTKVLYPEIADKYNTTPSRVERAIRHAIEVAWNRGNYEVISKMFGYTVHHLKS
KPTNSEFIAMIADKIRLEHMAS

Nucleotide


Download         Length: 789 bp        

>NTDB_id=65598 OXB_RS13735 WP_041076832.1 2799945..2800733(-) (spo0A) [Bacillus sp. OxB-1]
ATGGAAAAAGTGAGAATTGCAATTGCTGATGATAATAAAGAACTTGTGAAAACGATGGTCGCTTATTTTGAGAAGCACCC
GGAAATCGAAATTCTTTGGATGGCGCATAACGGAAATGAGTGCTTGACGAAAATGGAAGAAAACGTCCCGGACGTTCTGT
TGTTGGATATCATCATGCCGCATCTGGATGGCATCGCAGTTCTTGAAACATTGAATGGACGGGGGACGATGCCGAATGTC
ATCATGCTAACCGCTTTCGGACAGGAAGACGTCATGACGCACGCTGCTACCTTAGGCGCTTCCTATTTCATGTTGAAGCC
ATTCGAGTTCGATCGGCTTGTCCAGCAGATTTTCAAAGTGGCTGGCACGGCGAAGCCGGCACCGCCGCTTATGCAAAATA
GCGGCATTGTGGAAAGCGATGGGGCGGTCAGCCAGAAAATGCTCGATACGACAATCACTTCCATCATCAAGGAGATCGGT
GTTCCCGCTCATATTAAAGGGTATGCTTTTTTGCGTGAAGCCATCCAGAAAGTATACACGGACGCTGACTTGCTGGGCTC
GGTCACTAAAGTGCTCTATCCGGAAATTGCGGATAAATATAATACCACACCTTCCCGTGTGGAAAGGGCGATTCGCCATG
CAATCGAAGTGGCTTGGAATCGAGGCAATTATGAAGTCATTTCCAAAATGTTCGGCTATACCGTCCATCATTTGAAAAGC
AAGCCTACCAACAGTGAATTCATTGCGATGATTGCGGACAAGATCCGCTTGGAGCATATGGCCAGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

61.049

100

0.622


Multiple sequence alignment