Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LGL65_RS13360 Genome accession   NZ_CP092110
Coordinates   2609270..2609959 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain LOH112     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2604270..2614959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL65_RS13340 - 2604786..2605862 (+) 1077 WP_003151382.1 MraY family glycosyltransferase -
  LGL65_RS13345 - 2605962..2607155 (-) 1194 WP_151140083.1 LCP family protein -
  LGL65_RS13350 - 2607160..2607807 (-) 648 WP_007407485.1 YigZ family protein -
  LGL65_RS13355 degS 2608030..2609193 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  LGL65_RS13360 degU 2609270..2609959 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LGL65_RS13365 - 2610057..2610905 (+) 849 WP_237586810.1 DegV family protein -
  LGL65_RS13370 comFA 2611013..2612398 (+) 1386 WP_237586808.1 DEAD/DEAH box helicase Machinery gene
  LGL65_RS13375 - 2612456..2612740 (+) 285 WP_017418816.1 competence protein ComFB -
  LGL65_RS13380 comFC 2612746..2613435 (+) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  LGL65_RS13385 - 2613509..2613928 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  LGL65_RS13390 flgM 2613998..2614264 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LGL65_RS13395 - 2614279..2614761 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=655970 LGL65_RS13360 WP_003219701.1 2609270..2609959(+) (degU) [Bacillus velezensis strain LOH112]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=655970 LGL65_RS13360 WP_003219701.1 2609270..2609959(+) (degU) [Bacillus velezensis strain LOH112]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1