Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OXB_RS11985 Genome accession   NZ_AP013294
Coordinates   2441852..2442490 (-) Length   212 a.a.
NCBI ID   WP_052484004.1    Uniprot ID   A0A0A8JJT6
Organism   Bacillus sp. OxB-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2436852..2447490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXB_RS11965 (OXB_2370) - 2437370..2438083 (+) 714 WP_041074552.1 DnaD domain-containing protein -
  OXB_RS11970 (OXB_2371) nth 2438090..2438743 (+) 654 WP_041074553.1 endonuclease III -
  OXB_RS18000 (OXB_2372) - 2438733..2439080 (+) 348 WP_052484002.1 YpoC family protein -
  OXB_RS11980 (OXB_2373) - 2439153..2441855 (-) 2703 WP_052484003.1 PBP1A family penicillin-binding protein -
  OXB_RS11985 (OXB_2374) recU 2441852..2442490 (-) 639 WP_052484004.1 Holliday junction resolvase RecU Machinery gene
  OXB_RS11990 (OXB_2375) - 2442678..2444210 (+) 1533 WP_173426012.1 SNF2-related protein -
  OXB_RS11995 (OXB_2376) - 2444228..2445010 (+) 783 WP_041074555.1 YqhG family protein -
  OXB_RS12000 (OXB_2377) - 2445182..2445955 (+) 774 WP_041074556.1 glucose 1-dehydrogenase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24343.75 Da        Isoelectric Point: 7.5094

>NTDB_id=65596 OXB_RS11985 WP_052484004.1 2441852..2442490(-) (recU) [Bacillus sp. OxB-1]
MTIRYPNGKKYVRPAEQLGSPKKLDMSYSNRGKSLEDELNDSNAYYLSQGIAVIHKKPIPIQVVNVHYPARSAAVITEAY
FRTPSTTDFNGVWRGRYLDFEAKETKSATSFPLQNIHAHQVDHMKQVTEQGGIAFLVVKFTTLDRYFILPYDSLEEKWER
MKAGGRKSITLAEFEDAAYEIMPRFQPVLDYLPGLHLLFPQIGEPIERQENL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=65596 OXB_RS11985 WP_052484004.1 2441852..2442490(-) (recU) [Bacillus sp. OxB-1]
ATGACGATCCGATACCCGAATGGGAAGAAGTATGTGCGGCCGGCCGAGCAGCTGGGAAGCCCGAAAAAGTTGGATATGTC
TTATAGTAACCGGGGCAAGTCATTGGAAGATGAGCTGAATGACTCGAATGCCTATTACTTGAGCCAAGGCATCGCAGTCA
TCCATAAGAAGCCGATTCCGATCCAAGTCGTCAATGTCCACTACCCTGCCCGGAGTGCCGCCGTCATTACGGAAGCGTAT
TTCCGGACTCCGTCGACGACCGATTTCAACGGTGTCTGGCGCGGACGTTATCTCGATTTCGAGGCGAAGGAGACGAAAAG
TGCCACGTCCTTTCCACTGCAAAATATCCATGCCCACCAAGTGGACCATATGAAACAAGTGACGGAACAGGGCGGCATCG
CGTTTCTCGTCGTGAAATTTACGACGCTTGACCGTTATTTCATCCTACCGTATGATAGTCTCGAAGAAAAATGGGAGCGC
ATGAAAGCAGGCGGCCGGAAATCGATTACGCTTGCGGAATTCGAAGACGCGGCCTACGAAATCATGCCTCGCTTCCAACC
CGTGCTAGACTACTTGCCGGGACTTCATTTATTATTTCCACAAATCGGTGAACCAATCGAAAGGCAGGAAAACCTATGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8JJT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.769

93.868

0.505

Multiple sequence alignment