Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHU24_RS20515 Genome accession   NZ_CP108198
Coordinates   4578042..4579451 (+) Length   469 a.a.
NCBI ID   WP_266673015.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4573042..4584451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU24_RS20495 (OHU24_20485) - 4573118..4573942 (-) 825 WP_266673023.1 sugar phosphate isomerase/epimerase -
  OHU24_RS20500 (OHU24_20490) - 4574106..4575038 (-) 933 WP_266673021.1 Ppx/GppA phosphatase family protein -
  OHU24_RS20505 (OHU24_20495) - 4575110..4576039 (+) 930 WP_266673019.1 hypothetical protein -
  OHU24_RS20510 (OHU24_20500) - 4576072..4577787 (-) 1716 WP_406317062.1 BACON domain-containing protein -
  OHU24_RS20515 (OHU24_20505) radA/sms 4578042..4579451 (+) 1410 WP_266673015.1 DNA repair protein RadA Machinery gene
  OHU24_RS20520 (OHU24_20510) disA 4579564..4580688 (+) 1125 WP_266673013.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHU24_RS20525 (OHU24_20515) - 4581452..4582246 (-) 795 WP_329434321.1 hypothetical protein -
  OHU24_RS20530 (OHU24_20520) - 4582432..4583073 (+) 642 WP_266673011.1 phosphatase PAP2 family protein -
  OHU24_RS20535 (OHU24_20525) - 4583074..4583721 (-) 648 WP_330279732.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49629.80 Da        Isoelectric Point: 7.9430

>NTDB_id=655959 OHU24_RS20515 WP_266673015.1 4578042..4579451(+) (radA/sms) [Streptomyces sp. NBC_00118]
MAARTKSGKDRPSYRCTECGWQTAKWLGRCGECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDARQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAACDEHRTLYVTGEESASQVRMRADRIKAIDDHLYLAAETDLSAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVTEVADMGDALRVLPKSRRREAPREAEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=655959 OHU24_RS20515 WP_266673015.1 4578042..4579451(+) (radA/sms) [Streptomyces sp. NBC_00118]
ATGGCTGCCCGTACGAAATCCGGCAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCGAAATGGCT
GGGTCGCTGCGGCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGGACGACCGCGCCCGGCC
GGGTCACGACGTCCGCGGTCCCGATCGGCCAGGTCGACGCCCGGCAGGCCACCGCCCGCTCCACCGGCGTGCCCGAGCTC
GACCGGGTTCTCGGCGGGGGCCTCGTCCCCGGCGCCGTCGTCCTGGTCGCGGGCGAGCCCGGCGTCGGGAAGTCCACCCT
CCTGCTCGACGTCGCCGCCAAGGCCGCCTGCGACGAGCACCGCACCCTGTACGTCACGGGCGAGGAGTCGGCCAGCCAGG
TCCGGATGCGCGCCGACCGCATCAAGGCGATCGACGACCATCTGTATCTCGCCGCCGAGACCGACCTGTCCGCGGTCCTC
GGCCACTTGGACGCCGTCAAGCCCAGCCTCTTGATCATGGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGACGGCGC
TCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGCGGCATGGCCACCCTCC
TCGTGGGTCACGTCACCAAGGACGGCGCCATCGCCGGACCCCGCCTCCTCGAGCACCTCGTGGACGTCGTCCTCTCCTTC
GAAGGCGACCGGCACGCGCGCCTGCGCCTCGTACGCGGCGTGAAGAACCGGTACGGGACGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAAGGCATCACCGGGCTCGCCGACCCCAGCGGGCTGTTCCTCACCCGCCGCGACGAACCCGTCCCGG
GCACCTGCCTGACCGTCACCCTGGAGGGGCGGCGGCCTCTCGTCGCCGAGGTTCAGGCCCTCACCGTCGACTCCCAGATC
CCCTCCCCCCGGCGCACCACGTCCGGCCTGGAGACGTCTCGCGTCTCGATGATGCTCGCCGTGCTCGAGCAGCGCGGGCG
GATCAGCGCCCTGGGAAAGCGGGACATCTACTCCGCGACCGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCCGACCTCG
CCATCGCCCTCGCCCTCGCCAGCGCCGCCAGCGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGTGAAGTCGGCCTC
GCGGGCGAGGTCAGACGGGTGACCGGCGTGCAGCGCCGGCTCGCCGAGGCGCACCGGCTCGGCTTCACCCACGCCCTCGT
GCCGAGCGATCCGGGCAAGGTGCCCGCCGGTATGAAGGTCACCGAAGTCGCCGACATGGGGGACGCTCTGCGCGTGCTGC
CGAAGAGCCGTCGCCGAGAGGCCCCACGGGAGGCGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(77-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus pneumoniae D39

42.316

95.736

0.405
  radA Streptococcus pneumoniae R6

42.316

95.736

0.405
  radA Streptococcus pneumoniae Rx1

42.316

95.736

0.405
  radA Streptococcus pneumoniae TIGR4

42.316

95.736

0.405
  radA Streptococcus mitis SK321

43.765

90.618

0.397
  radA Streptococcus mitis NCTC 12261

43.765

90.618

0.397