Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   LGL65_RS08580 Genome accession   NZ_CP092110
Coordinates   1661104..1661223 (-) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain LOH112     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1656104..1666223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL65_RS08555 - 1656344..1657102 (-) 759 WP_012116804.1 ABC transporter ATP-binding protein -
  LGL65_RS08560 - 1657096..1658043 (-) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  LGL65_RS08565 ceuB 1658033..1658986 (-) 954 WP_238810437.1 ABC transporter permease Machinery gene
  LGL65_RS08570 - 1659400..1660764 (+) 1365 WP_025649998.1 aspartate kinase -
  LGL65_RS08575 - 1660859..1660954 (+) 96 WP_012116800.1 YjcZ family sporulation protein -
  LGL65_RS08580 phrC 1661104..1661223 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LGL65_RS08585 rapC 1661207..1662355 (-) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  LGL65_RS08590 - 1662508..1663941 (-) 1434 WP_237586938.1 HAMP domain-containing sensor histidine kinase -
  LGL65_RS08595 - 1663928..1664611 (-) 684 WP_014416901.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=655951 LGL65_RS08580 WP_003156334.1 1661104..1661223(-) (phrC) [Bacillus velezensis strain LOH112]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=655951 LGL65_RS08580 WP_003156334.1 1661104..1661223(-) (phrC) [Bacillus velezensis strain LOH112]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718