Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LGL65_RS08565 Genome accession   NZ_CP092110
Coordinates   1658033..1658986 (-) Length   317 a.a.
NCBI ID   WP_238810437.1    Uniprot ID   -
Organism   Bacillus velezensis strain LOH112     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1653033..1663986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL65_RS08545 - 1653912..1655336 (+) 1425 WP_104843086.1 MDR family MFS transporter -
  LGL65_RS08550 - 1655378..1656322 (-) 945 WP_021495116.1 siderophore ABC transporter substrate-binding protein -
  LGL65_RS08555 - 1656344..1657102 (-) 759 WP_012116804.1 ABC transporter ATP-binding protein -
  LGL65_RS08560 - 1657096..1658043 (-) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  LGL65_RS08565 ceuB 1658033..1658986 (-) 954 WP_238810437.1 ABC transporter permease Machinery gene
  LGL65_RS08570 - 1659400..1660764 (+) 1365 WP_025649998.1 aspartate kinase -
  LGL65_RS08575 - 1660859..1660954 (+) 96 WP_012116800.1 YjcZ family sporulation protein -
  LGL65_RS08580 phrC 1661104..1661223 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LGL65_RS08585 rapC 1661207..1662355 (-) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  LGL65_RS08590 - 1662508..1663941 (-) 1434 WP_237586938.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34929.24 Da        Isoelectric Point: 9.6741

>NTDB_id=655950 LGL65_RS08565 WP_238810437.1 1658033..1658986(-) (ceuB) [Bacillus velezensis strain LOH112]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTAA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRLIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=655950 LGL65_RS08565 WP_238810437.1 1658033..1658986(-) (ceuB) [Bacillus velezensis strain LOH112]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCAACGGCTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTTGTCAAAGGCAGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCCCACAC
CGCTCTCTTGGGCGCTGTTTTTGTACTGTTTTGCGACATTTTGGGAAGGTTGATCATTTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536