Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   L3Q72_RS02875 Genome accession   NZ_CP092106
Coordinates   606241..606864 (-) Length   207 a.a.
NCBI ID   WP_275131175.1    Uniprot ID   -
Organism   Vibrio sp. JC009     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 601241..611864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Q72_RS02865 (L3Q72_02865) aceF 603020..604597 (+) 1578 WP_275131173.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  L3Q72_RS02870 (L3Q72_02870) lpdA 604748..606175 (+) 1428 WP_275131174.1 dihydrolipoyl dehydrogenase -
  L3Q72_RS02875 (L3Q72_02875) opaR 606241..606864 (-) 624 WP_275131175.1 TetR/AcrR family transcriptional regulator Regulator
  L3Q72_RS02880 (L3Q72_02880) hpt 607122..607652 (+) 531 WP_275131176.1 hypoxanthine phosphoribosyltransferase -
  L3Q72_RS02885 (L3Q72_02885) can 607838..608497 (-) 660 WP_275131177.1 carbonate dehydratase -
  L3Q72_RS02890 (L3Q72_02890) - 608843..609760 (+) 918 WP_275131178.1 ABC transporter ATP-binding protein -
  L3Q72_RS02895 (L3Q72_02895) - 609763..610533 (+) 771 WP_275131179.1 ABC transporter permease -
  L3Q72_RS02900 (L3Q72_02900) panC 610619..611524 (-) 906 WP_275131180.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23830.22 Da        Isoelectric Point: 5.6339

>NTDB_id=655901 L3Q72_RS02875 WP_275131175.1 606241..606864(-) (opaR) [Vibrio sp. JC009]
MDMIKKRPRTRLSPQKRKLQLMDIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLHHVVRQFSGFLN
ETVDMSVHIKENLEKSTSQVVELVRSDCHWLKVWFEWSASTRDEIWPLFVTLNSNSSIVLESMFRKAVERGEVCESQNPE
YLAKLFHGLCYAVYVQANREQDDEALNDMVKGFLNMLCIYNDEAATA

Nucleotide


Download         Length: 624 bp        

>NTDB_id=655901 L3Q72_RS02875 WP_275131175.1 606241..606864(-) (opaR) [Vibrio sp. JC009]
ATGGATATGATCAAAAAAAGACCCAGAACCCGTCTGTCTCCTCAGAAGCGTAAGCTTCAATTGATGGATATCGCATTAGA
GGTATTCGCGAGAAGAGGTATCGGCCGGGGTGGGCATGCGGATATTGCTGAGATCGCTCAGGTTTCAGTGGCAACCGTCT
TCAACTACTTCCCGACAAGAGAGGATCTTGTTGATGAAGTACTTCACCATGTGGTTCGTCAGTTCTCCGGTTTCCTGAAT
GAAACCGTTGATATGTCTGTTCACATCAAGGAAAACCTTGAAAAATCAACATCTCAGGTAGTTGAACTGGTTCGTTCAGA
CTGTCACTGGCTAAAAGTGTGGTTTGAGTGGAGTGCATCAACCCGTGATGAGATCTGGCCTCTGTTTGTTACTCTGAACA
GCAACAGCTCAATCGTACTTGAGAGCATGTTCAGAAAGGCCGTTGAGCGTGGCGAAGTCTGTGAATCACAGAACCCTGAG
TACCTGGCTAAACTGTTCCACGGTCTCTGCTATGCCGTTTATGTACAGGCAAACCGTGAGCAGGACGATGAAGCACTAAA
CGATATGGTTAAGGGCTTCCTTAACATGCTTTGTATCTATAATGACGAAGCAGCAACAGCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

67.98

98.068

0.667
  hapR Vibrio cholerae C6706

63.317

96.135

0.609
  hapR Vibrio cholerae strain A1552

63.317

96.135

0.609