Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   L3Q72_RS00540 Genome accession   NZ_CP092106
Coordinates   117415..117891 (-) Length   158 a.a.
NCBI ID   WP_342752146.1    Uniprot ID   -
Organism   Vibrio sp. JC009     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112415..122891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Q72_RS00510 (L3Q72_00510) gspL 112697..113908 (+) 1212 WP_275130757.1 type II secretion system protein GspL -
  L3Q72_RS00515 (L3Q72_00515) - 113905..114399 (+) 495 WP_275130758.1 type II secretion system protein M -
  L3Q72_RS00520 (L3Q72_00520) - 114401..115159 (+) 759 WP_275130759.1 type II secretion system protein N -
  L3Q72_RS00525 (L3Q72_00525) nudE 115197..115754 (+) 558 WP_275130760.1 ADP compounds hydrolase NudE -
  L3Q72_RS00530 (L3Q72_00530) cysQ 115765..116589 (+) 825 WP_275130761.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  L3Q72_RS00535 (L3Q72_00535) nfuA 116726..117313 (-) 588 WP_275130762.1 Fe-S biogenesis protein NfuA -
  L3Q72_RS00540 (L3Q72_00540) comF 117415..117891 (-) 477 WP_342752146.1 ComF family protein Machinery gene
  L3Q72_RS00545 (L3Q72_00545) bioH 118208..118975 (+) 768 WP_275130764.1 pimeloyl-ACP methyl ester esterase BioH -
  L3Q72_RS00550 (L3Q72_00550) - 119092..119562 (+) 471 WP_275130765.1 ATP-dependent Lon protease -
  L3Q72_RS00555 (L3Q72_00555) - 119661..121997 (-) 2337 WP_275130766.1 Tex family protein -
  L3Q72_RS00560 (L3Q72_00560) - 122141..122707 (+) 567 WP_275130767.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18150.92 Da        Isoelectric Point: 9.5059

>NTDB_id=655891 L3Q72_RS00540 WP_342752146.1 117415..117891(-) (comF) [Vibrio sp. JC009]
MGDYQTPLSGYVSQLKYHHKYRFAYDLSYLLSLNIDHPAPVVIPVPLHWKRYIRRGYNQSWILAHYLCEHLGQQSQLNRK
VFRRIKSTPPQQSLSLQARQSNLSGAFQLLNHPGVEHVAIVDDVVTTGSTARHLCQLLLDIGVKKIDIYCICRTPEPS

Nucleotide


Download         Length: 477 bp        

>NTDB_id=655891 L3Q72_RS00540 WP_342752146.1 117415..117891(-) (comF) [Vibrio sp. JC009]
GTGGGAGATTATCAGACACCGCTTTCCGGATACGTCAGTCAGCTGAAATATCACCACAAATACCGCTTCGCCTATGACCT
GAGCTATCTGCTTTCCCTGAATATCGATCACCCGGCTCCTGTTGTAATCCCTGTCCCGCTGCACTGGAAACGCTATATCC
GCAGGGGCTACAACCAAAGCTGGATACTGGCACACTATCTTTGTGAACATCTAGGGCAACAGAGCCAGCTTAATCGTAAG
GTGTTCCGGAGAATAAAGTCCACACCACCTCAGCAAAGCCTCTCCTTACAGGCAAGACAGTCCAACCTCAGTGGCGCATT
TCAGTTATTAAATCACCCCGGTGTGGAGCATGTTGCTATCGTTGACGATGTGGTGACAACAGGCAGTACAGCCCGGCATT
TATGCCAGTTACTCCTTGATATTGGAGTAAAAAAAATTGATATTTACTGTATATGCCGAACTCCTGAACCGTCATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(81-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

54.14

99.367

0.538
  comF Vibrio campbellii strain DS40M4

49.367

100

0.494
  comFC Legionella pneumophila strain ERS1305867

37.821

98.734

0.373
  comFC Legionella pneumophila str. Paris

37.821

98.734

0.373