Detailed information
Bioinformatically predicted
Overview
| Name | degU | Type | Regulator |
| Locus tag | OXB_RS08480 | Genome accession | NZ_AP013294 |
| Coordinates | 1728295..1728969 (+) | Length | 224 a.a. |
| NCBI ID | WP_041073434.1 | Uniprot ID | A0A0A8JI30 |
| Organism | Bacillus sp. OxB-1 | ||
| Function | activation of comK (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1723295..1733969
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OXB_RS08460 (OXB_1651) | - | 1723558..1724601 (+) | 1044 | WP_041073426.1 | MraY family glycosyltransferase | - |
| OXB_RS08465 (OXB_1652) | - | 1724908..1725957 (-) | 1050 | WP_041073428.1 | LCP family protein | - |
| OXB_RS08470 (OXB_1653) | - | 1726121..1726753 (-) | 633 | WP_041073430.1 | YigZ family protein | - |
| OXB_RS08475 (OXB_1654) | degS | 1727119..1728276 (+) | 1158 | WP_041073432.1 | sensor histidine kinase | Regulator |
| OXB_RS08480 (OXB_1655) | degU | 1728295..1728969 (+) | 675 | WP_041073434.1 | response regulator transcription factor | Regulator |
| OXB_RS08485 (OXB_1656) | - | 1729339..1729911 (+) | 573 | WP_041073436.1 | hypothetical protein | - |
| OXB_RS08490 (OXB_1657) | - | 1730715..1731074 (+) | 360 | WP_041073438.1 | hypothetical protein | - |
| OXB_RS08495 (OXB_1658) | - | 1731076..1731588 (-) | 513 | WP_041073439.1 | competence protein ComK | - |
| OXB_RS08500 (OXB_1659) | - | 1731755..1732921 (-) | 1167 | WP_041073441.1 | M20 family metallopeptidase | - |
| OXB_RS08505 (OXB_1660) | - | 1733013..1733528 (-) | 516 | WP_041073443.1 | antibiotic biosynthesis monooxygenase | - |
Sequence
Protein
Download Length: 224 a.a. Molecular weight: 25382.02 Da Isoelectric Point: 5.5882
>NTDB_id=65589 OXB_RS08480 WP_041073434.1 1728295..1728969(+) (degU) [Bacillus sp. OxB-1]
MTKILIVDDHQLFREGVKRILDFEDSFNVVAEGDDGSEVVELYRQYLPDVVLMDINMPRMNGVDATENLIQEFPDAKVIM
LSIHDDESYVSHALKTGALGYMLKEMDADAIVQAIKVVAAGGSYLHPKVTHNLVTEFRRLSEREHKGSFQQNDIRRPFHL
LTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMAVNDRTQAVVTAIKNGWVEVK
MTKILIVDDHQLFREGVKRILDFEDSFNVVAEGDDGSEVVELYRQYLPDVVLMDINMPRMNGVDATENLIQEFPDAKVIM
LSIHDDESYVSHALKTGALGYMLKEMDADAIVQAIKVVAAGGSYLHPKVTHNLVTEFRRLSEREHKGSFQQNDIRRPFHL
LTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMAVNDRTQAVVTAIKNGWVEVK
Nucleotide
Download Length: 675 bp
>NTDB_id=65589 OXB_RS08480 WP_041073434.1 1728295..1728969(+) (degU) [Bacillus sp. OxB-1]
ATGACAAAGATCTTAATTGTTGACGACCATCAGTTGTTCCGGGAAGGAGTGAAACGCATCCTGGATTTCGAAGACTCGTT
CAATGTGGTGGCCGAGGGAGATGATGGAAGTGAAGTGGTGGAGCTTTATCGGCAATACCTTCCGGATGTCGTGCTGATGG
ATATCAATATGCCACGCATGAACGGGGTAGACGCGACGGAGAATTTGATTCAAGAATTTCCTGACGCAAAAGTGATCATG
CTTTCTATCCATGACGACGAATCCTATGTGTCTCACGCACTGAAAACAGGGGCGCTCGGCTATATGCTGAAAGAAATGGA
TGCTGATGCGATTGTCCAAGCGATCAAAGTCGTGGCAGCGGGCGGTTCGTATCTTCACCCGAAAGTGACGCATAATCTTG
TGACGGAATTCCGCAGATTGAGCGAGCGTGAACATAAAGGATCATTCCAGCAAAACGATATCCGCCGTCCGTTCCATTTG
CTCACGAAACGGGAGTGTGAGGTGCTCCAATTATTGACGGATGGGCAAAGCAACCGGACAATTGGTGAAACGCTGTTCAT
TTCCGAAAAGACAGTCAAAAACCATGTCTCCAGCATCTTGCAGAAGATGGCAGTTAATGACCGGACGCAAGCTGTCGTCA
CAGCAATTAAAAACGGTTGGGTTGAAGTGAAATGA
ATGACAAAGATCTTAATTGTTGACGACCATCAGTTGTTCCGGGAAGGAGTGAAACGCATCCTGGATTTCGAAGACTCGTT
CAATGTGGTGGCCGAGGGAGATGATGGAAGTGAAGTGGTGGAGCTTTATCGGCAATACCTTCCGGATGTCGTGCTGATGG
ATATCAATATGCCACGCATGAACGGGGTAGACGCGACGGAGAATTTGATTCAAGAATTTCCTGACGCAAAAGTGATCATG
CTTTCTATCCATGACGACGAATCCTATGTGTCTCACGCACTGAAAACAGGGGCGCTCGGCTATATGCTGAAAGAAATGGA
TGCTGATGCGATTGTCCAAGCGATCAAAGTCGTGGCAGCGGGCGGTTCGTATCTTCACCCGAAAGTGACGCATAATCTTG
TGACGGAATTCCGCAGATTGAGCGAGCGTGAACATAAAGGATCATTCCAGCAAAACGATATCCGCCGTCCGTTCCATTTG
CTCACGAAACGGGAGTGTGAGGTGCTCCAATTATTGACGGATGGGCAAAGCAACCGGACAATTGGTGAAACGCTGTTCAT
TTCCGAAAAGACAGTCAAAAACCATGTCTCCAGCATCTTGCAGAAGATGGCAGTTAATGACCGGACGCAAGCTGTCGTCA
CAGCAATTAAAAACGGTTGGGTTGAAGTGAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| degU | Bacillus subtilis subsp. subtilis str. 168 |
70.306 |
100 |
0.719 |