Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   OXB_RS08475 Genome accession   NZ_AP013294
Coordinates   1727119..1728276 (+) Length   385 a.a.
NCBI ID   WP_041073432.1    Uniprot ID   A0A0A8JHM6
Organism   Bacillus sp. OxB-1     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722119..1733276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXB_RS08460 (OXB_1651) - 1723558..1724601 (+) 1044 WP_041073426.1 MraY family glycosyltransferase -
  OXB_RS08465 (OXB_1652) - 1724908..1725957 (-) 1050 WP_041073428.1 LCP family protein -
  OXB_RS08470 (OXB_1653) - 1726121..1726753 (-) 633 WP_041073430.1 YigZ family protein -
  OXB_RS08475 (OXB_1654) degS 1727119..1728276 (+) 1158 WP_041073432.1 sensor histidine kinase Regulator
  OXB_RS08480 (OXB_1655) degU 1728295..1728969 (+) 675 WP_041073434.1 response regulator transcription factor Regulator
  OXB_RS08485 (OXB_1656) - 1729339..1729911 (+) 573 WP_041073436.1 hypothetical protein -
  OXB_RS08490 (OXB_1657) - 1730715..1731074 (+) 360 WP_041073438.1 hypothetical protein -
  OXB_RS08495 (OXB_1658) - 1731076..1731588 (-) 513 WP_041073439.1 competence protein ComK -
  OXB_RS08500 (OXB_1659) - 1731755..1732921 (-) 1167 WP_041073441.1 M20 family metallopeptidase -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44763.17 Da        Isoelectric Point: 5.4310

>NTDB_id=65588 OXB_RS08475 WP_041073432.1 1727119..1728276(+) (degS) [Bacillus sp. OxB-1]
MKETTFDIQTLDAIFNNMVRTMDQSKNDIFIISEQSRQSFEEMQNELKMVKEDISRVITEGDYLEDMTRHSRRRLADVSK
SFMNYSEEEVRQAYEVANDLLVRLSVNKMEEKQLRQRRDELDRRLAGLMETIERADQLVSQVTTVVNYLTTDLKNVGEAL
ESARHKSEFGIRIIQAQEEERKRLSRDIHDGPAQMLANVMIRSGLIEKTYTEKGPDKALAELADLKEMVRSALYEVRRII
YDLRPMALDDLGLIPTLKKYLTTVEEYQKGVTIHFQSTGQERRFNSNFEVSVFRLVQESVSNALKHANCTDIWVKAEWIH
DIMNIIIKDNGKGFEQKEVKDKSFGLIGMRERIDLLKGEMNVISNPGTGTTILFRIPLRMDMIDY

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=65588 OXB_RS08475 WP_041073432.1 1727119..1728276(+) (degS) [Bacillus sp. OxB-1]
TTGAAGGAAACTACATTTGATATCCAGACGTTGGATGCCATTTTCAATAACATGGTTCGCACAATGGATCAATCTAAAAA
TGATATATTCATTATAAGTGAACAGAGCCGGCAAAGCTTTGAAGAGATGCAAAATGAGCTGAAAATGGTGAAAGAGGATA
TTTCCCGGGTAATTACGGAAGGCGATTATTTGGAAGATATGACACGCCATTCCCGTAGGAGACTTGCCGACGTATCGAAA
AGTTTCATGAATTATTCCGAAGAAGAAGTGCGGCAAGCATACGAAGTTGCCAATGATTTGCTCGTCCGCCTCTCGGTCAA
TAAGATGGAAGAAAAGCAGCTGCGACAGCGGCGCGATGAATTGGATCGCAGATTGGCCGGGCTGATGGAGACGATCGAGC
GGGCCGATCAGCTTGTCAGCCAGGTGACAACAGTTGTCAATTATTTGACGACTGATCTGAAAAATGTGGGAGAAGCCCTC
GAATCGGCACGCCATAAATCGGAATTTGGCATTCGCATCATCCAAGCGCAAGAGGAGGAGCGGAAACGGCTGTCCCGGGA
CATCCATGATGGTCCCGCTCAAATGTTGGCCAATGTCATGATCCGGTCGGGGTTGATTGAAAAGACGTATACGGAGAAAG
GGCCTGACAAGGCATTGGCCGAACTCGCCGATCTCAAGGAGATGGTGAGGAGCGCGTTGTATGAAGTACGCCGCATCATC
TATGATCTCCGGCCGATGGCATTGGATGATCTGGGGTTGATTCCGACGTTGAAAAAATATTTGACCACTGTGGAAGAATA
TCAAAAAGGTGTGACAATCCACTTTCAAAGCACGGGGCAGGAACGTCGATTTAACTCGAATTTTGAAGTTTCCGTTTTTC
GGCTTGTCCAGGAGTCCGTCTCAAATGCATTAAAACATGCAAATTGCACGGACATATGGGTGAAAGCGGAGTGGATTCAC
GATATAATGAATATCATCATCAAAGATAATGGAAAAGGGTTCGAACAGAAAGAAGTGAAAGATAAGTCATTTGGCTTGAT
TGGGATGAGGGAGCGGATCGACCTGTTGAAGGGGGAAATGAACGTCATTTCCAATCCCGGTACAGGGACAACCATCCTTT
TCCGCATTCCGCTACGAATGGACATGATTGACTACTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(290-379)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8JHM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

55.844

100

0.558

Multiple sequence alignment