Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MCF40_RS07460 Genome accession   NZ_CP092072
Coordinates   1614838..1615539 (-) Length   233 a.a.
NCBI ID   WP_072324129.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain 1710042798     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1609838..1620539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCF40_RS07440 (MCF40_07440) rpsT 1610747..1610998 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  MCF40_RS07445 (MCF40_07445) holA 1611048..1612022 (-) 975 WP_001282558.1 DNA polymerase III subunit delta -
  MCF40_RS07450 (MCF40_07450) comEC 1612079..1614280 (-) 2202 WP_031787280.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MCF40_RS07455 (MCF40_07455) - 1614285..1614746 (-) 462 WP_000439693.1 ComE operon protein 2 -
  MCF40_RS07460 (MCF40_07460) comEA 1614838..1615539 (-) 702 WP_072324129.1 ComEA family DNA-binding protein Machinery gene
  MCF40_RS07465 (MCF40_07465) - 1615579..1616295 (-) 717 WP_031787282.1 class I SAM-dependent DNA methyltransferase -
  MCF40_RS07470 (MCF40_07470) rsfS 1616298..1616651 (-) 354 WP_001088023.1 ribosome silencing factor -
  MCF40_RS07475 (MCF40_07475) yqeK 1616652..1617236 (-) 585 WP_031787283.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  MCF40_RS07480 (MCF40_07480) - 1617226..1617795 (-) 570 WP_000725169.1 nicotinate-nucleotide adenylyltransferase -
  MCF40_RS07485 (MCF40_07485) yhbY 1617798..1618088 (-) 291 WP_000955238.1 ribosome assembly RNA-binding protein YhbY -
  MCF40_RS07490 (MCF40_07490) aroE 1618093..1618899 (-) 807 WP_031787284.1 shikimate dehydrogenase -
  MCF40_RS07495 (MCF40_07495) yqeH 1618912..1620012 (-) 1101 WP_031787285.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26367.06 Da        Isoelectric Point: 9.7027

>NTDB_id=655780 MCF40_RS07460 WP_072324129.1 1614838..1615539(-) (comEA) [Staphylococcus argenteus strain 1710042798]
MVLLYQFLLRYKDFFNQWKLYIISAVVLIMLLIGFIFWRQDEHTARDFENKDTALKQNTSENSSLSKLEDVQVKDGDNSK
NKGPVYIDVKGAVKHPNVYKMTSKDRVIDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHTKN
GNTKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 702 bp        

>NTDB_id=655780 MCF40_RS07460 WP_072324129.1 1614838..1615539(-) (comEA) [Staphylococcus argenteus strain 1710042798]
GTGGTTTTGTTGTATCAATTTTTATTACGCTATAAAGATTTTTTCAATCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGTTATTAATAGGTTTTATATTCTGGAGACAAGATGAACATACTGCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAACACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATATCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTACAAAATGACATCTAAGGATAGAGT
AATTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTTATACCTCATAAAGGACAAAAGAACGTTGAACCACAAATTGGAGTAAATAGTGTGCACACAAAAAAT
GGGAACACAAAAAATGGAAACACAAATAATACTAAAGTAAATCTAAATACGGCATCTGTATCTGAATTGATGTCTGTTCC
TGGAGTAGGTCAAGCTAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGA
AAAAAGTAAAAGGTTTTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

91.81

99.571

0.914
  comEA Staphylococcus aureus N315

91.81

99.571

0.914