Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OXB_RS03895 Genome accession   NZ_AP013294
Coordinates   731171..732541 (-) Length   456 a.a.
NCBI ID   WP_041072060.1    Uniprot ID   A0A0A8JFR4
Organism   Bacillus sp. OxB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 726171..737541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXB_RS03875 (OXB_0731) gltX 727036..728499 (-) 1464 WP_041072052.1 glutamate--tRNA ligase -
  OXB_RS03880 (OXB_0732) ispF 728571..729047 (-) 477 WP_041072053.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OXB_RS03885 (OXB_0733) ispD 729022..729738 (-) 717 WP_041072055.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OXB_RS03890 (OXB_0734) - 729805..730917 (-) 1113 WP_041072058.1 PIN/TRAM domain-containing protein -
  OXB_RS03895 (OXB_0735) radA 731171..732541 (-) 1371 WP_041072060.1 DNA repair protein RadA Machinery gene
  OXB_RS03900 (OXB_0736) clpC 732619..735075 (-) 2457 WP_041072062.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  OXB_RS03905 (OXB_0737) - 735301..736389 (-) 1089 WP_041072064.1 protein arginine kinase -
  OXB_RS03910 (OXB_0738) - 736379..736936 (-) 558 WP_331711238.1 UvrB/UvrC motif-containing protein -
  OXB_RS03915 (OXB_0739) - 736968..737438 (-) 471 WP_041072066.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49918.56 Da        Isoelectric Point: 6.8998

>NTDB_id=65575 OXB_RS03895 WP_041072060.1 731171..732541(-) (radA) [Bacillus sp. OxB-1]
MAKRKTKFMCRSCGYESPKWMGRCPGCGEWNTMDEEVEIVQKGPRGAFQHSENIRQKAMPISAVETVEEPRVETELGEFN
RVLGGGIVPGSLILIGGDPGIGKSTLLLQVSSLLSNKKQRVLYISGEESIRQTKLRAERLGVASDELYIYAETDLGQIHE
TISDVKPRFVIVDSIQTVHHPEVTSAPGSVSQVRECTAELMKIAKTQGIAIFLVGHVTKDGQIAGPRLLEHMVDTVLYFE
GERHHTYRILRSVKNRFGSTNEIAIFEMLQSGLKEVLNPSELFLRERSQGGAGSTVVASMEGTRPILVEIQALVTPSSFN
YPKRMATGIDQNRVSLLMAVLEKRMGMLLQAQDAYIKVAGGVKLDEPAIDLAVLMSIVSSYKDAAVGVSDCFIGEVGLTG
EVRRVSRIEQRVVEAAKLGFERAIIPSSNLGGWDYPKGIQVVGVETISEALKVAFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=65575 OXB_RS03895 WP_041072060.1 731171..732541(-) (radA) [Bacillus sp. OxB-1]
ATGGCTAAACGGAAAACGAAATTCATGTGCCGCTCCTGCGGTTACGAGTCGCCGAAATGGATGGGGCGCTGTCCAGGCTG
TGGGGAATGGAATACGATGGATGAAGAAGTGGAAATCGTCCAAAAAGGACCGCGTGGAGCGTTCCAGCACTCTGAAAATA
TACGGCAAAAGGCGATGCCGATCAGTGCAGTCGAAACGGTGGAAGAACCGCGGGTGGAGACGGAACTCGGGGAATTCAAC
CGGGTGCTGGGCGGAGGCATCGTCCCGGGTTCATTGATCCTCATCGGGGGCGACCCGGGCATCGGGAAATCGACCTTGCT
GTTGCAAGTATCCTCGCTTCTATCAAATAAAAAGCAGCGCGTCTTGTATATTTCCGGAGAGGAATCGATCCGCCAGACGA
AGCTGCGGGCGGAGCGGCTCGGGGTCGCATCGGATGAGCTGTATATTTACGCTGAAACGGACTTGGGGCAAATCCATGAA
ACGATTTCGGATGTCAAGCCGCGCTTCGTCATCGTGGACTCGATCCAGACCGTCCATCATCCGGAAGTGACATCCGCTCC
GGGAAGCGTGTCGCAAGTCCGGGAATGTACGGCCGAGTTGATGAAAATTGCAAAAACGCAAGGGATTGCCATCTTCCTTG
TAGGTCACGTGACGAAGGATGGACAGATCGCAGGTCCGCGGTTGTTGGAGCATATGGTGGACACCGTTTTGTACTTCGAA
GGGGAGCGCCATCACACATATCGGATTTTGCGCAGCGTCAAAAACCGGTTCGGCTCGACAAATGAAATCGCCATTTTCGA
GATGTTGCAATCAGGTCTGAAAGAGGTCCTGAACCCGTCTGAACTGTTTCTGCGGGAACGATCCCAAGGCGGAGCCGGCT
CGACCGTCGTCGCCTCCATGGAAGGGACTCGCCCGATCTTGGTGGAAATTCAAGCGCTTGTTACTCCGTCCAGTTTCAAT
TATCCGAAGCGGATGGCGACGGGGATCGATCAAAACCGGGTATCCTTGCTCATGGCGGTGCTGGAAAAACGGATGGGCAT
GCTGTTGCAGGCGCAAGATGCGTATATCAAAGTGGCCGGTGGCGTAAAACTAGATGAACCGGCCATCGATTTGGCGGTAT
TGATGAGCATCGTCTCCAGTTATAAAGATGCTGCTGTCGGGGTATCCGACTGTTTCATTGGCGAAGTCGGCTTGACGGGG
GAGGTCCGCAGGGTATCCCGGATTGAACAACGGGTTGTGGAAGCGGCCAAACTAGGATTCGAGCGGGCTATCATTCCATC
TTCCAACCTCGGTGGATGGGACTATCCGAAAGGTATTCAAGTAGTCGGTGTCGAGACGATTAGCGAAGCTTTGAAGGTTG
CATTTGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-222)

Subunit ChlI of Mg-chelatase (ChlI)

(358-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8JFR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.678

100

0.721
  radA Streptococcus pneumoniae Rx1

62.144

100

0.623
  radA Streptococcus pneumoniae D39

62.144

100

0.623
  radA Streptococcus pneumoniae R6

62.144

100

0.623
  radA Streptococcus pneumoniae TIGR4

62.144

100

0.623
  radA Streptococcus mitis NCTC 12261

62.144

100

0.623
  radA Streptococcus mitis SK321

61.926

100

0.621

Multiple sequence alignment