Detailed information NTG0655652

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHB42_RS28920
• Genome accession: NZ_CP108181
• Coordinates: 6424465..6425751 (+)
• Length: 428 a.a.
• NCBI ID: WP_266564255.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00134
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 6419465..6430751

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHB42_RS28890 (OHB42_28860)	-	6420605..6420799 (+)	195	WP_100594330.1	hypothetical protein	-
OHB42_RS28905 (OHB42_28875)	tig	6421316..6422704 (+)	1389	WP_266670514.1	trigger factor	-
OHB42_RS28910 (OHB42_28880)	clpP	6422988..6423596 (+)	609	WP_116513663.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHB42_RS28915 (OHB42_28885)	clpP	6423650..6424309 (+)	660	WP_266670511.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHB42_RS28920 (OHB42_28890)	clpX	6424465..6425751 (+)	1287	WP_266564255.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHB42_RS28925 (OHB42_28895)	-	6425836..6426267 (-)	432	WP_406318042.1	hypothetical protein	-
OHB42_RS28930 (OHB42_28900)	-	6426466..6427413 (-)	948	WP_389563900.1	hypothetical protein	-
OHB42_RS28935 (OHB42_28905)	-	6427599..6430229 (+)	2631	WP_266670504.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46822.50 Da
• Isoelectric Point: 4.7856

>NTDB_id=655652 OHB42_RS28920 WP_266564255.1 6424465..6425751(+) (clpX) [Streptomyces sp. NBC_00134]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEA
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELSKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIHSKRELEEKDQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILLEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRRTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
AEAVHSNVNPTLIPRDARGSGSGEQKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=655652 OHB42_RS28920 WP_266564255.1 6424465..6425751(+) (clpX) [Streptomyces sp. NBC_00134]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAGCTCGCGGAGACGA
GCGAGGTCCGCTGGGAAGAACTTCCCAAGCCTCGCGAGATCTACGAGTTCCTCGAAGGCTATGTCGTCGGCCAGGAGGCC
GCGAAGAAAGCCCTCTCGGTCGCTGTGTACAACCATTACAAGCGGGTCCAGGCCGGTGAGAACGGCGGAGCCCAGGGACG
CGACGACGCGATCGAGCTGTCGAAGTCCAACATCCTGCTCCTGGGCCCCACGGGCTCGGGCAAGACGCTCCTGGCCCAGA
CCCTGGCCCGCATGCTGAACGTTCCGTTCGCCATCGCCGACGCGACGGCGCTCACGGAGGCCGGCTATGTGGGCGAGGAC
GTCGAGAACATCCTCCTGAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGATGTGTCCGGTGAGGGCGTCCAGCAGGCTC
TGCTCAAGATCCTTGAGGGGACCACGGCTTCCGTCCCGCCCCAGGGCGGCCGCAAGCACCCCCATCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCGTTCGCCGGACTGGAGAAGATCATCGAGTCGCGGGCGGGTGC
CAAGGGCATCGGCTTCGGCGCGACGATCCACTCCAAGCGCGAGCTGGAGGAGAAGGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTCCCCGTCATCACCTCGGTCCACAACCTGGACCGC
GAGGCGCTCCTCCAGATTCTCCTGGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTGCGCCGCACCGGCGCGCGCGGCCTGC
GCGCGATCATGGAGGAAGTCCTCCAGTCCGTGATGTACGAGGTCCCCTCCCGCAAGGACGTGGCCCGCGTCGTCATCACG
GCAGAGGCCGTCCACTCGAACGTGAACCCGACGCTGATCCCCCGCGACGCCCGCGGCTCGGGCAGCGGAGAGCAGAAGTC
CGCCTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.433	93.925	0.596
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.745	96.028	0.526