Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHB42_RS22015 Genome accession   NZ_CP108181
Coordinates   4881231..4881830 (-) Length   199 a.a.
NCBI ID   WP_116511760.1    Uniprot ID   A0A437PZ07
Organism   Streptomyces sp. NBC_00134     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4876231..4886830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB42_RS21995 (OHB42_21980) - 4876958..4877626 (-) 669 WP_116511753.1 SigE family RNA polymerase sigma factor -
  OHB42_RS22000 (OHB42_21985) - 4877983..4879050 (-) 1068 WP_266672708.1 aspartate-semialdehyde dehydrogenase -
  OHB42_RS22005 (OHB42_21990) - 4879050..4880330 (-) 1281 WP_266672707.1 aspartate kinase -
  OHB42_RS22010 (OHB42_21995) - 4880579..4881238 (-) 660 WP_266672706.1 DUF5063 domain-containing protein -
  OHB42_RS22015 (OHB42_22000) recR 4881231..4881830 (-) 600 WP_116511760.1 recombination mediator RecR Machinery gene
  OHB42_RS22020 (OHB42_22005) - 4881921..4882262 (-) 342 WP_266676506.1 YbaB/EbfC family nucleoid-associated protein -
  OHB42_RS22025 (OHB42_22010) - 4882531..4883292 (+) 762 WP_266672705.1 SLATT domain-containing protein -
  OHB42_RS22030 (OHB42_22015) - 4883369..4884019 (-) 651 WP_266672704.1 hypothetical protein -
  OHB42_RS22035 (OHB42_22020) - 4884088..4886577 (-) 2490 WP_406317172.1 dolichyl-phosphate beta-glucosyltransferase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21808.24 Da        Isoelectric Point: 4.9909

>NTDB_id=655636 OHB42_RS22015 WP_116511760.1 4881231..4881830(-) (recR) [Streptomyces sp. NBC_00134]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCNICRDPRRDLTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=655636 OHB42_RS22015 WP_116511760.1 4881231..4881830(-) (recR) [Streptomyces sp. NBC_00134]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTCGGCAGGCTGCCGGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTACGGCGTCTCGCGCAGGCCCTCATGGAGGTCAAGGCCAAGGTCC
GCTTCTGCGCGACCTGCGGCAATGTGGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTGACGGTG
ATCTGTGTCGTCGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCAAGTACCACGTGCTCGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGGATAAGGGAACTCCTCGCCCGCCTCGCCGACGGAA
CGGTCACCGAGCTGATCCTGGCCACGGACCCGAACCTGGAGGGCGAGGCCACGGCGACGTACCTCGCCCGCATGATCAAG
CCGATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGGCTCCCGGTCGGGGGCGACCTGGAATACGCGGACGAGGTCACGCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A437PZ07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462