Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AH5611_RS10140 Genome accession   NZ_CP092055
Coordinates   2058630..2059025 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain USA600     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2053630..2064025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AH5611_RS10115 (AH5611_001952) thiE 2054228..2054869 (-) 642 WP_000483162.1 thiamine phosphate synthase -
  AH5611_RS10120 (AH5611_001953) thiM 2054871..2055662 (-) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  AH5611_RS10125 (AH5611_001954) thiD 2055646..2056476 (-) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AH5611_RS10130 (AH5611_001955) tenA 2056469..2057158 (-) 690 WP_000396063.1 thiaminase II -
  AH5611_RS10135 (AH5611_001956) sceD 2057546..2058241 (-) 696 WP_238762298.1 lytic transglycosylase SceD -
  AH5611_RS10140 (AH5611_001957) ssb 2058630..2059025 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  AH5611_RS10145 (AH5611_001958) - 2059219..2059659 (+) 441 WP_000846751.1 YwpF-like family protein -
  AH5611_RS10150 (AH5611_001959) fabZ 2059715..2060155 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AH5611_RS10155 (AH5611_001960) murA 2060189..2061454 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AH5611_RS10160 (AH5611_001961) - 2061565..2061798 (-) 234 WP_000384523.1 DUF1146 family protein -
  AH5611_RS10165 (AH5611_001962) - 2062395..2062799 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=655489 AH5611_RS10140 WP_000932694.1 2058630..2059025(-) (ssb) [Staphylococcus aureus strain USA600]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=655489 AH5611_RS10140 WP_000932694.1 2058630..2059025(-) (ssb) [Staphylococcus aureus strain USA600]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992