Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AH5611_RS07515 Genome accession   NZ_CP092055
Coordinates   1575220..1575906 (-) Length   228 a.a.
NCBI ID   WP_072468915.1    Uniprot ID   A0A5F0HFN7
Organism   Staphylococcus aureus strain USA600     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570220..1580906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AH5611_RS07495 (AH5611_001453) rpsT 1571143..1571394 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  AH5611_RS07500 (AH5611_001454) holA 1571439..1572413 (-) 975 WP_001282573.1 DNA polymerase III subunit delta -
  AH5611_RS07505 (AH5611_001455) comEC 1572470..1574662 (-) 2193 WP_203594404.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AH5611_RS07510 (AH5611_001456) - 1574667..1575128 (-) 462 WP_000439693.1 ComE operon protein 2 -
  AH5611_RS07515 (AH5611_001457) comEA 1575220..1575906 (-) 687 WP_072468915.1 ComEA family DNA-binding protein Machinery gene
  AH5611_RS07520 (AH5611_001458) - 1575946..1576662 (-) 717 WP_000084840.1 class I SAM-dependent methyltransferase -
  AH5611_RS07525 (AH5611_001459) rsfS 1576665..1577018 (-) 354 WP_001088020.1 ribosome silencing factor -
  AH5611_RS07530 (AH5611_001460) yqeK 1577019..1577603 (-) 585 WP_001017837.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  AH5611_RS07535 (AH5611_001461) nadD 1577593..1578162 (-) 570 WP_000725165.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  AH5611_RS07540 (AH5611_001462) yhbY 1578165..1578455 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  AH5611_RS07545 (AH5611_001463) aroE 1578459..1579265 (-) 807 WP_000666750.1 shikimate dehydrogenase -
  AH5611_RS07550 (AH5611_001464) yqeH 1579279..1580379 (-) 1101 WP_069724241.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25812.41 Da        Isoelectric Point: 9.3305

>NTDB_id=655477 AH5611_RS07515 WP_072468915.1 1575220..1575906(-) (comEA) [Staphylococcus aureus strain USA600]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQAKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGENSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=655477 AH5611_RS07515 WP_072468915.1 1575220..1575906(-) (comEA) [Staphylococcus aureus strain USA600]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGCCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACACCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGAAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5F0HFN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961