Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG915_RS22025 Genome accession   NZ_CP108165
Coordinates   4967348..4967947 (-) Length   199 a.a.
NCBI ID   WP_107018120.1    Uniprot ID   A0A2P8Q5R9
Organism   Streptomyces sp. NBC_00151     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4962348..4972947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG915_RS22005 (OG915_22025) - 4962835..4963461 (-) 627 WP_326786515.1 SigE family RNA polymerase sigma factor -
  OG915_RS22010 (OG915_22030) - 4964042..4965103 (-) 1062 WP_326786516.1 aspartate-semialdehyde dehydrogenase -
  OG915_RS22015 (OG915_22035) - 4965100..4966392 (-) 1293 WP_326786517.1 aspartate kinase -
  OG915_RS22020 (OG915_22040) - 4966696..4967355 (-) 660 WP_326786518.1 DUF5063 domain-containing protein -
  OG915_RS22025 (OG915_22045) recR 4967348..4967947 (-) 600 WP_107018120.1 recombination mediator RecR Machinery gene
  OG915_RS22030 (OG915_22050) - 4968047..4968391 (-) 345 WP_326786519.1 YbaB/EbfC family nucleoid-associated protein -
  OG915_RS22035 (OG915_22055) - 4968698..4969441 (+) 744 WP_326786520.1 SLATT domain-containing protein -
  OG915_RS22040 (OG915_22060) - 4969459..4969664 (-) 206 Protein_4378 phosphate ABC transporter substrate-binding protein -
  OG915_RS22045 (OG915_22065) - 4969812..4971878 (-) 2067 WP_326786521.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21782.22 Da        Isoelectric Point: 4.9908

>NTDB_id=655229 OG915_RS22025 WP_107018120.1 4967348..4967947(-) (recR) [Streptomyces sp. NBC_00151]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCNICRDPRRDLSV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=655229 OG915_RS22025 WP_107018120.1 4967348..4967947(-) (recR) [Streptomyces sp. NBC_00151]
TTGTACGAAGGCGTTGTTCAGGACCTCATCGACGAACTGGGGCGGCTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTCCGCCGGCTCGCGCAGTGCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTGGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTCTCGGTG
ATCTGTGTGGTGGAGGAGCCGAAGGACGTCGTCGCGGTCGAGCGGACGCGTGAGTTCCGGGGCAAGTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGCATCAGGGAACTCCTGGCCCGCCTCGCCGACGGCG
CGGTCACCGAGCTCATCCTGGCCACGGATCCGAACCTGGAGGGCGAGGCCACGGCCACGTATCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTCACGCT
CGGCCGCGCCTTCGAGGGGAGACGACTTCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P8Q5R9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457