Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ANG_RS07005 Genome accession   NZ_AP013072
Coordinates   1380290..1381522 (-) Length   410 a.a.
NCBI ID   WP_003027977.1    Uniprot ID   I0SHV1
Organism   Streptococcus anginosus subsp. whileyi MAS624     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375290..1386522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANG_RS06985 (ANG_1417) - 1376079..1377752 (-) 1674 WP_025271858.1 FtsK/SpoIIIE domain-containing protein -
  ANG_RS06990 (ANG_1418) - 1377763..1378626 (-) 864 WP_003033304.1 IS982 family transposase -
  ANG_RS06995 (ANG_1420) - 1378863..1379570 (-) 708 WP_003035004.1 glucosaminidase domain-containing protein -
  ANG_RS07000 (ANG_1421) yihA 1379691..1380278 (-) 588 WP_003035043.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ANG_RS07005 (ANG_1422) clpX 1380290..1381522 (-) 1233 WP_003027977.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ANG_RS11110 (ANG_1423) - 1381560..1381733 (-) 174 WP_003035049.1 hypothetical protein -
  ANG_RS07015 (ANG_1424) - 1381733..1382245 (-) 513 WP_003035097.1 dihydrofolate reductase -
  ANG_RS07020 (ANG_1425) - 1382432..1383271 (-) 840 WP_025271859.1 thymidylate synthase -
  ANG_RS07025 (ANG_1426) - 1383357..1384574 (-) 1218 WP_003034942.1 voltage-gated chloride channel family protein -
  ANG_RS07030 (ANG_1427) - 1384590..1384853 (-) 264 WP_003035068.1 chorismate mutase -
  ANG_RS07035 (ANG_1428) - 1384892..1385734 (-) 843 WP_025271860.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45688.21 Da        Isoelectric Point: 4.4242

>NTDB_id=65522 ANG_RS07005 WP_003027977.1 1380290..1381522(-) (clpX) [Streptococcus anginosus subsp. whileyi MAS624]
MPTNRTNEMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNREDEEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDETGSYMQEIISEDIQKFGLIPELIGRLPVFAALEPLTVDDLVR
ILREPKNALVKQYQTLLSYDDVKLEFDDDALQEIANKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=65522 ANG_RS07005 WP_003027977.1 1380290..1381522(-) (clpX) [Streptococcus anginosus subsp. whileyi MAS624]
ATGCCTACAAATCGTACGAACGAAATGATGGTTTATTGTTCTTTTTGTGGTAAAAGCCAAGAAGAAGTTCAAAAAATTAT
CGCAGGAAATAATGCCTTTATTTGTAATGAATGTGTGGAATTAGCACAAGAAATTATTAGAGAAGAATTAGCAGAAGAAG
TGCTGGCAGACTTGTCAGAAGTACCAAAACCGCAAGAACTACTCAATATTTTGAATCATTATGTGATTGGACAAGACCGT
GCTAAGCGAGCATTGGCCGTTGCTGTTTACAATCACTATAAACGCATCAATTTTCATGATAATCGTGAAGATGAGGAAGA
TGTCGAATTGCAGAAATCCAATATCCTCATGATTGGACCAACTGGTTCTGGCAAGACCTTTCTCGCTCAAACCTTGGCGA
AAAGTCTGAATGTTCCTTTTGCGATTGCAGACGCGACAGCTTTGACAGAAGCTGGGTATGTCGGAGAAGATGTTGAAAAT
ATTCTCTTGAAACTCTTGCAAGCAGCAGATTTCAATATTGAGCGTGCAGAACGTGGTATCATCTATGTAGATGAGATTGA
CAAAATTGCGAAGAAAAGCGAAAATGTCTCTATTACTCGCGATGTGTCTGGTGAAGGCGTTCAGCAAGCGCTTCTAAAAA
TCATTGAAGGAACTGTTGCCAGCGTACCTCCGCAAGGCGGCCGCAAGCACCCTCAACAAGAAATGATTCAAGTAGATACG
AAAAATATCCTCTTTATCGTTGGAGGAGCTTTCGACGGTATCGAAGAAATTGTTAAACAACGTCTAGGCGAAAAAATTAT
CGGTTTTGGTCAAAATAATAAAGCCATTGATGAAACTGGTTCTTATATGCAAGAAATCATCTCTGAAGATATTCAAAAAT
TTGGCTTGATTCCGGAATTGATTGGTCGTTTGCCTGTGTTTGCAGCGCTTGAGCCTTTGACAGTTGATGATTTGGTGCGA
ATCCTGCGCGAACCAAAGAATGCTTTAGTGAAGCAATATCAGACTCTCCTTTCTTATGATGATGTTAAACTAGAGTTTGA
TGATGATGCTCTTCAGGAAATTGCTAACAAGGCCATTGAACGCAAGACAGGTGCGCGTGGATTGCGGTCGATTATCGAGG
AAACTATGATGGATGTCATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAGTTAGTGCGGATTACCAAGGAAGCAGTTGAC
GGAACGGATAAGCCGATTTTAGAAACAGCATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SHV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.458

98.049

0.573

Multiple sequence alignment