Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MA853_RS03225 Genome accession   NZ_CP092026
Coordinates   631104..631874 (+) Length   256 a.a.
NCBI ID   WP_002810979.1    Uniprot ID   A0A5T0DGP4
Organism   Campylobacter coli strain 14240-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 626104..636874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA853_RS03210 (MA853_03210) - 626980..628914 (-) 1935 WP_002810982.1 ribonuclease R family protein -
  MA853_RS03215 (MA853_03215) ilvC 629037..630059 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  MA853_RS03220 (MA853_03220) - 630062..631114 (+) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  MA853_RS03225 (MA853_03225) dprA 631104..631874 (+) 771 WP_002810979.1 DNA-processing protein DprA Machinery gene
  MA853_RS03230 (MA853_03230) ruvX 631871..632251 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  MA853_RS03235 (MA853_03235) - 632262..633116 (+) 855 WP_370450124.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  MA853_RS03240 (MA853_03240) msrA 633339..633839 (-) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  MA853_RS03245 (MA853_03245) ppa 633887..634405 (-) 519 WP_002776378.1 inorganic diphosphatase -
  MA853_RS03250 (MA853_03250) - 634415..634990 (-) 576 WP_002781658.1 adenylate kinase -
  MA853_RS03255 (MA853_03255) aspS 634987..636738 (-) 1752 WP_002781656.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28789.17 Da        Isoelectric Point: 5.0727

>NTDB_id=655197 MA853_RS03225 WP_002810979.1 631104..631874(+) (dprA) [Campylobacter coli strain 14240-1]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLA

Nucleotide


Download         Length: 771 bp        

>NTDB_id=655197 MA853_RS03225 WP_002810979.1 631104..631874(+) (dprA) [Campylobacter coli strain 14240-1]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGACTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTCTTTATAAGGGTTTTGGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0DGP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.654

100

0.77
  dprA Helicobacter pylori 26695

47.917

93.75

0.449